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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAACTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGATTGCTTCTTGGGTTGTTTTTTCTAACTACGGGAACTTCAATCGACATGCAGgttaatatgatatcatttatgatatatgtagcatggtttttagattttctaagcatggctattatgttaatttttctgttgtgtctgtgcatatatgcaa...

Basic information

species Glycine max
transcript GLYMA08G06890.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06890.3 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os12g42300.1 (Oryza sativa), 5'ss of exon 10
GACAAACTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGATTGCTTCTTGGGTTGTTTTTTCTAACTACGGGAACTTCAATCGACATGCAGgt-taatatgatatcatttatgatatatgtagcatggtttttagattttctaagcatgg-ctattatgttaatttttctgttgtgtctgtgcatatatgcaa-
|||||| ||| | ||||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||| | ||||| |||||||| || |||||| |||| | |  || |  | |   |   | |||    |||  ||  | ||     |  ||||  || || || | |   ||   |  | ||  |  | ||  | || 
GACAAATTTCCGTACCCAAATTGAAGCTGACATAAGGCCATTCAGAGGTTTGCTGCTTGGGTTGTTCTTTGTGACTACAGGAACTTCTATTGACATGGAGgtattaactgtttacctccttttcacatgagcaatgagtt--aaatgactgagccatgatctgttttggtgaacattacttcatatcact-taaatgagaaat

upper sequence: GLYMA08G06890.3 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G009715_T01 (Zea mays), 5'ss of exon 10
GACAAACTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGATTGCTTCTTGGGTTGTTTTTTCTAACTACGGGAACTTCAATCGACATGCAGgt-taatatgatatcatttatgatatatgtagcatggtttttagattttctaagcatggctattatgttaatttttctgttgtgtctgtgcatatatgcaa
 ||||| ||| |||| || ||||||||||||||||| ||||| || || ||| | |||||| |||| ||| | ||||| || ||||| || |||||||||||  |||    |||  |||   |  |    |  ||||||    |    ||  |   |   |   |   || ||  | | ||      |   | ||||  | 
AACAAATTTCCGGACACAAATTGAAGCTGACATAAGGCCATTCAGGGGCTTGTTGCTTGGGCTGTTCTTTGTGACTACAGGGACTTCCATTGACATGCAGgtacaattgtttatgtttttccaagtgaacaa-atggttgaatgtcaatcacactttttattcaagagtagttcatgtatttccatggctaagatatatag

upper sequence: GLYMA08G06890.3 (Glycine max), 5'ss of exon 11
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 11
GACAAACTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGATTGCTTCTTGGGTTGTTTTTTCTAACTACGGGAACTTCAATCGACATGCAGgttaatatgatatcatttatgatatatgtagcatggtttttagattttctaagcatggctattatgttaatttttctgttgtgtctgtgcatatatgcaa
 ||||| ||| | || || ||||||||||| || || ||||||||||| || ||||| || ||||| ||| |||| || |||||||| || |||||| |||| ||  || |||  |  ||   ||| | | |   ||| ||     |   ||  |||     | |  |  |  | ||  ||||  |       | |||| 
AACAAATTTCCGAACACAAATTGAAGCTGATATTAGGCCATTTAGAGGTTTACTTCTCGGTTTGTTCTTTGTAACCACAGGAACTTCCATTGACATGGAGgtaaac-tgttatactgcattgcataag-aactcagttatttccactgaaaaatatgatacatttcatgttcatgctcatgtggttaaaatcttttgcag

upper sequence: GLYMA08G06890.3 (Glycine max), 5'ss of exon 11
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 11
GACAAACTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGATTGCTTCTTGGGTTGTTTTTTCTAACTACGGGAACTTCAATCGACATGCAGgttaatatgatatcatttatgatatatgtagcatggtttttagattttctaagcatggctattatgttaatttttctgttgtgtctgtgcatatatgcaa---
 ||||| ||| | || ||||||||||| || ||||| ||||||||||| || ||||||||||| |||||| ||||||| || |||||||| |||| |||||| ||| |||| |  || | || || | | |     |  | | ||  | |     |   ||| |   || |||||    ||||  ||  || |    |||   
AACAAATTTCCGAACACAGATTGAAGCAGATATAAGGCCATTTAGAGGCTTACTTCTTGGGTTATTTTTTGTAACTACAGGGACTTCAATTGACACGCAGgtgaatttgat-tatttaaagacatgtattgtccattagtaatatcatatgtagttatgtatgagtatagtttttt--gtgtgcttgaccacaagatcaatat