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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttctattggtttcacaatttaactggtatctgttgctttgcaatagatttgcagcactttccttgttgtgtaacttgtgttacattattcttttcag

Basic information

species Glycine max
transcript GLYMA08G01750.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01750.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv02s0025g03530.t01 (Vitis vinifera), 5'ss of exon 11
GACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttctattggtttcacaatttaactggtatctgttgctttgcaatagatttgcagcactttccttgttgtgtaacttgtgttacattattcttttcag
|||||| | || |||| ||||||||   ||||||||||||| ||||   ||||||||||||| |||||  ||||||| ||||| ||||||||        || ||   |  |  | || | |    ||    ||     || ||||     |  ||      |  | ||  | |||||  || |||  |||||
GACTTCATAGCAGGAAAACTTCCTTCACTTCCTGGTGAATTGCCAAACTTCAATGATTGGGAGAATCATCTGACAACAATATTCCCTGAGgt--------ataggcacctgagatcaaattga---tgaaattt-----tatatttcttagatgttgtcacctaagaaa--tatgttat-tttttccattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7478861|gb|AW666435.1|AW666435
EST:     TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG                         GTCAGGCTGAAGAGATATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGATATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: gi|26047199|gb|CA784068.1|CA784068
EST:     TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG                         GTCAGGCTGAAGAGATATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGATATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: gi|207767185|gb|GD739597.1|GD739597
EST:     GATTGGGAAAATCACTTGACAACTATATTTCCTGAG                         GTCAGGCTGAAGAGATATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
genomic: GATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGATATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG