Sequence
atgc intronic sequence ATGC exonic sequenceCCAACAATGTTGATAAAAAACTGTATGAACTCGACTTAGGTCGCATATTGCGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAgtatgttaattgtctccctagctttttggttcttcttgcttcttaattttctgtcttcaactgatgtatcggtaaaactgttagtttccttaaagccatt...
Basic information
species | Glycine max |
transcript | GLYMA08G01040.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G01040.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM5G814700_T01 (Zea mays), 5'ss of exon 1
-CCAACAATGTTGATAAAAAACTGTATGAACTCGACTTAGGTCGCATATTGCGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAgtatgttaattgtctccctagctttttggttcttcttgcttcttaattttctgtcttcaactgatgtatcggtaaaactgttagtttccttaaagccatt-
||| || | |||| | |||||| || || | | |||||| |||| ||||||||| ||||||||||| |||||||| ||||| || || ||||||||| | | || ||| || | | | | || |||||||| | | | | || | ||| | | || || |
ACCAGTC-TGATAATAAGCGGCAGTATGAGCTTGATGTTGACCGCATAATGCGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttgagatcactcagttttatgctacattt---------atgttctgtctcaa--taaaatttcttttgttctggttggctcttttgggtttcag
upper sequence: GLYMA08G01040.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 11
CCAACAATGTTGATAAAAAACTGTATGAACTCGACTTAGGTCGCATATTGCGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAgtatgttaattgtctccctagct-ttttggttcttcttgcttcttaattttctgtcttcaactgatgtatcggtaaaactgttagtttcct-taaagccatt
||||| || |||||| |||| ||||||||| ||| | | ||| ||||| |||||||||||| ||||||| ||||| |||||||| || ||||||||||||||||| ||| | ||| ||| |||| || || || || | ||| | || | | ||| | || || | | ||
CCAACCATACTGATAAGAAACAGTATGAACTTGACATTGATCGTATATTACGTGGGGAAGACTGCCGAACGACACTGATGATAAAGAACATTCCCAACAAgtatgtgaataattgtccttgctgtttttaccttttctgtttgttgctacaatgtgatt--ttgttacccctccttccctgaaacttcactatttaattatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16106132|gb|BI893872.1|BI893872EST: CGTGGGGAAGACAGCCGAACTATACTTATGATAAAAAATATTCCCAACAA GTATACTTCAAAGATGCTTCTTGCTGCAATAGACGAGCAATGTAAAGGAAC
genomic: CGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAgtatgttaat ... tgtttggtagGTATACTTCAAAGATGCTTCTTGCTGCAATAGACGAGCAATGTAAAGGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCAACAATGTTGATAAAAAACTGTATGAACTCGACTTAGGTCGCATATTGCGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAgtatgttaattgtctccctagctttttggttcttcttgcttcttaattttctgtcttcaactgatgtatcggtaaaactgttagtttccttaaagccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctcccta