1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CAGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGAGAAGAGAAAGCAACAGGGCACATATAAAGGAGGATTTAGGGGGCAGTCCCACTTTTTCGGgtactccgtctattttagatatatcattcttggagttgtaaggtttgataatatgatttgctatgagacagaaaaatatgaaaaggtcctatggtcctgc...
species | Glycine max |
transcript | GLYMA07G39380.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGGGGCAGTCCCACTTTTTCGG CTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTAEST: gi|254342635|gb|GR858797.1|GR858797
genomic: GGGGGCAGTCCCACTTTTTCGGgtactccgtc ... aaatatgcagCTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTA
EST: C-ACAGGGCACATATAAAGGAGGATTTAGGGGGCAGTCCCACTTTTTCGG CTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTAEST: gi|254342634|gb|GR858796.1|GR858796
genomic: CAACAGGGCACATATAAAGGAGGATTTAGGGGGCAGTCCCACTTTTTCGGgtactccgtc ... aaatatgcagCTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTA
EST: CAACAGGGCACATATAAAGGAGGATTTAGGGGGCAGTCCCACTTTTTCGG CTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTAEST: gi|298174798|gb|HO017907.1|HO017907
genomic: CAACAGGGCACATATAAAGGAGGATTTAGGGGGCAGTCCCACTTTTTCGGgtactccgtc ... aaatatgcagCTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTA
EST: GTCCCACTTTTTCGG CTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTAEST: gi|151402902|gb|EV272715.1|EV272715
genomic: GTCCCACTTTTTCGGgtactccgtc ... aaatatgcagCTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTA
EST: CAACAGGGCACATATAAAGGAGGATTTAGGGGGCAGTCCCACTTTTTCGG CTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCCAEST: gi|26058870|gb|CA801784.1|CA801784
genomic: CAACAGGGCACATATAAAGGAGGATTTAGGGGGCAGTCCCACTTTTTCGGgtactccgtc ... aaatatgcagCTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTA
EST: CAACAGGGCACATATAAAGGAGGATTTAGGGGGCAGTCCCACTTTTTCGG CTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTAEST: gi|254318250|gb|GR832418.1|GR832418
genomic: CAACAGGGCACATATAAAGGAGGATTTAGGGGGCAGTCCCACTTTTTCGGgtactccgtc ... aaatatgcagCTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTA
EST: GATTTA-GGGGCAGTCCCAC-TTTTC-G CTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTAEST: gi|298181953|gb|HO026128.1|HO026128
genomic: GATTTAGGGGGCAGTCCCACTTTTTCGGgtactccgtc ... aaatatgcagCTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTA
EST: CAACAGGGCACATATAAAGGAGGATTTAGGGGGCAGTCCCACTTTTTCGG CTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTAEST: gi|18712744|gb|BM522681.1|BM522681
genomic: CAACAGGGCACATATAAAGGAGGATTTAGGGGGCAGTCCCACTTTTTCGGgtactccgtc ... aaatatgcagCTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTA
EST: TTTAGGGGGCAGTCCCACTTTTTCGG CTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTA
genomic: TTTAGGGGGCAGTCCCACTTTTTCGGgtactccgtc ... aaatatgcagCTATGAAGGGAGATGTGGCTTGCCAACTAATTTTGATTCTACTTACTGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGAGAAGAGAAAGCAACAGGGCACATATAAAGGAGGATTTAGGGGGCAGTCCCACTTTTTCGGgtactccgtctattttagatatatcattcttggagttgtaaggtttgataatatgatttgctatgagacagaaaaatatgaaaaggtcctatggtcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT