1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATCAACTCCATTTCTAATTGTACTCCCAGTACTGACGATATGGTTCCATATATACTGCAAAGGCCGTTTCGAACCTGCATTTGTTAGATATCCCTTACAGgtatgtggattaatcattccgatggctaataagcctaagagtagctgtatgcaatgatggatttgttagatatccatatcatccttccatcagatcatat...
species | Glycine max |
transcript | GLYMA07G39320.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TATACTGCAAAGGCCGTTTCGAACCTGCATTTGTTAGATATCCCTTACAG GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAACEST: gi|13240510|gb|BG359819.1|BG359819
genomic: TATACTGCAAAGGCCGTTTCGAACCTGCATTTGTTAGATATCCCTTACAGgtatgtggat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: TATACTGCAAAGGCCGTTTCGAACCTGCATTTGTTAGATATCCCTTACAG GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAACEST: gi|51341182|gb|CO982499.1|CO982499
genomic: TATACTGCAAAGGCCGTTTCGAACCTGCATTTGTTAGATATCCCTTACAGgtatgtggat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
EST: TATACTGCAAAGGCCGTTTCGAACCTGCATTTGTTAGATATCCCTTACAG GAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
genomic: TATACTGCAAAGGCCGTTTCGAACCTGCATTTGTTAGATATCCCTTACAGgtatgtggat ... ttgtaaacagGAAGCGATGATGAAAGACACATTGGAACGAGCTACAGATCCCAACTTTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAACTCCATTTCTAATTGTACTCCCAGTACTGACGATATGGTTCCATATATACTGCAAAGGCCGTTTCGAACCTGCATTTGTTAGATATCCCTTACAGgtatgtggattaatcattccgatggctaataagcctaagagtagctgtatgcaatgatggatttgttagatatccatatcatccttccatcagatcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttcca