1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGGTGCTGCTTGTCCTGCGTGTGAGATGGCTGTTGTTTGGATGCAGAACCAGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtgagtcagttgtcttcatttttctattcaagcatcctgctgcatctcttgatttattgcctcatgatgacattgcag
species | Glycine max |
transcript | GLYMA07G39240.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAG CTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGGEST: gi|9564737|gb|BE474246.1|BE474246
genomic: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtgagtcagt ... gacattgcagCTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGG
EST: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAG CTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGGEST: gi|207846405|gb|GD818106.1|GD818106
genomic: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtgagtcagt ... gacattgcagCTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGG
EST: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAG TEST: gi|207846405|gb|GD818106.1|GD818106
genomic: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtgagtcagt ... gacattgcag-
EST: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAG TEST: gi|57575750|gb|CX548725.1|CX548725
genomic: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtgagtcagt ... gacattgcag-
EST: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAG CTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGG
genomic: AGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtgagtcagt ... gacattgcagCTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGCTGCTTGTCCTGCGTGTGAGATGGCTGTTGTTTGGATGCAGAACCAGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGTTACATCAACCAGgtgagtcagttgtcttcatttttctattcaagcatcctgctgcatctcttgatttattgcctcatgatgacattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA