Sequence
atgc intronic sequence ATGC exonic sequenceCAATCCTACAATTTTTGCCATAAGAGAAGCACAACTTCTGTGGCCAGATACAAAAATTGACTGTCTGGTTTCAGTAGGATGTGGTTCTGTTCGAACCAGGgtaagtaatcttctctgttttagttctctaataatattctgtgttcaaaaaagaagatcaagggctttgatagttattcattgtaacacttgtttcatag...
Basic information
species | Glycine max |
transcript | GLYMA07G38890.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G451672_T01 (Zea mays), 5'ss of exon 6
CAATCCTACAATTTTTGCCATAAGAGAAGCACAACTTCTGTGGCCAGATACAAAAATTGACTGTCTGGTTTCAGTAGGATGTGGTTCTGTTCGAACCAGGgtaagtaatcttctctgttttagttctctaa------taatattctgtgttcaaaaaagaagatcaagggctttgatagttattcattgtaacacttgtttcatag
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CAATCCTACGATCTTTGCCATTAGAGAAGCACAACTTTTGTGGCCAGATACACGAATAGATTGTCTAGTTTCGATAGGATGTGGCTCAGTTCCAACTAAGgtaatttattgctgctcgttttattattgaaattatctaacactcatcatttggtgca-attctgaatacttcagaaatttacttgtgaaaataaatttta-----
upper sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G426556_T01 (Zea mays), 5'ss of exon 10
CAATCCTACAATTTTTGCCATAAGAGAAGCACAACTTCTGTGGCCAGATACAAAAATTGACTGTCTGGTTTCAGTAGGATGTGGTTCTGTTCGAACCAGGgtaagtaatcttctctgttttagttctctaataatattctgtgttcaaaaa-----agaagatcaagggcttt-gatagttattcattgtaacacttgtttcatag
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CAATCCTACAATCTTTGCCATTAGAGAAGCACAACTTTTGTGGCCAGATGCACGAATAGATTGTCTAGTCTCGATAGGATGTGGCTCAGTTCCAACTAAGgtaattcaatgcgtctcgctttgttgttgaa-attatctaatactcagcaactggtacaattctgaatacttcagagatttacttatgaaaataaatttta-----
upper sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 12
CAATCCTACAATTTTTGCCATAAGAGAAGCACAACTTCTGTGGCCAGATACAAAAATTGACTGTCTGGTTTCAGTAGGATGTGGTTCTGTTCGAACCAGGgtaagtaatcttctctgttttagttctctaata---atattctgtgttcaaaaaagaagatcaagggctttgata-gttattcattgtaacacttgtttcatag-------------------------------------------
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CAATCCTACAATCTTTGCCATCAGAGAAGCACAACTTCTATGGCCTGACACAAAAATTGATTGCTTGGTTTCGATTGGCTCTGGCTCTGTACCAACAAGGgtaattc-ccgtttttcctgtggctccagattgtgcaaaatctatgtttatgttggaaaaccactgaaatacatatggtggataaaatcttgccgtccttgtaatgttaagtaattatttttcattgttgatctaactcccttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13311431|gb|BG405082.1|BG405082EST: CAAAAATTGACTGTCTGGTTTCAGTAGGATGTGGTTCTGTTCGAACTAGG GTACGAAAAGGAGGTTGGCGGTATCTGGACACGGGGCAGGTGTTGATTGAG
genomic: CAAAAATTGACTGTCTGGTTTCAGTAGGATGTGGTTCTGTTCGAACCAGGgtaagtaatc ... acgtttgtagGTACGAAAAGGAGGTTGGCGGTATCTGGATACGGGGCAGGTGTTGATTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATCCTACAATTTTTGCCATAAGAGAAGCACAACTTCTGTGGCCAGATACAAAAATTGACTGTCTGGTTTCAGTAGGATGTGGTTCTGTTCGAACCAGGgtaagtaatcttctctgttttagttctctaataatattctgtgttcaaaaaagaagatcaagggctttgatagttattcattgtaacacttgtttcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaagaa