1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CCATGGAGCAGCAGAGTATAAGCATATCAAAAGCTGGAATTGTTACATCTCTTCAGGCACGCTGTTCTGTTATTGCTGCGGCAAATCCTGTTGGTGGAAGgtaagcaaatatgtaaggttgcatgtatctggctgcaagttggcactgtttatcagtgtcccagctaagatttcaacagtcatacacattgaaagatattggatgtactatgagtattgatttatggttttgatccatttttctagcatctaagctttactcttaaatttaactttttcttggacttgcag
species | Glycine max |
transcript | GLYMA07G36680.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTTCAGGCACGCTGTTCTGTTATTGCTGCGGCAAATCCTGTTGGTGGAAG ATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATEST: gi|15813323|gb|BI785598.1|BI785598
genomic: CTTCAGGCACGCTGTTCTGTTATTGCTGCGGCAAATCCTGTTGGTGGAAGgtaagcaaat ... ggacttgcagATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAAT
EST: CTTCAGGCACGCTGTTCTGTTATTGCTGCGGCAAATCCTGTTGGTGGAAG ATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATEST: gi|27424931|gb|CA936451.1|CA936451
genomic: CTTCAGGCACGCTGTTCTGTTATTGCTGCGGCAAATCCTGTTGGTGGAAGgtaagcaaat ... ggacttgcagATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAAT
EST: CTTCAGGCACGCTGTTCTGTTATTGCTGCGGCAAATCCTGTTGGTGGAAG ATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATEST: gi|207844410|gb|GD814455.1|GD814455
genomic: CTTCAGGCACGCTGTTCTGTTATTGCTGCGGCAAATCCTGTTGGTGGAAGgtaagcaaat ... ggacttgcagATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAAT
EST: CTTCAGGCACGCTGTTCTGTTATTGCTGCGGCAAATCCTGTTGGTGGAAG ATATGATTCCTCAAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAAEST: gi|193476634|gb|FK439509.1|FK439509
genomic: CTTCAGGCACGCTGTTCTGTTATTGCTGCGGCAAATCCTGTTGGTGGAAGgtaagcaaat ... ggacttgcagATATGATTCCTCAAAAA-CATTCTCTCAAAATGTTGAATTGACAGATCCAA
EST: CTTCAGGCACGCTGTTCTGTTATTGCTGCGGCAAATCCTGTTGGTGGAAG ATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATEST: gi|15813380|gb|BI785655.1|BI785655
genomic: CTTCAGGCACGCTGTTCTGTTATTGCTGCGGCAAATCCTGTTGGTGGAAGgtaagcaaat ... ggacttgcagATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAAT
EST: TGTTGGTGGAAG ATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAAT
genomic: TGTTGGTGGAAGgtaagcaaat ... ggacttgcagATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATGGAGCAGCAGAGTATAAGCATATCAAAAGCTGGAATTGTTACATCTCTTCAGGCACGCTGTTCTGTTATTGCTGCGGCAAATCCTGTTGGTGGAAGgtaagcaaatatgtaaggttgcatgtatctggctgcaagttggcactgtttatcagtgtcccagctaagatttcaacagtcatacacattgaaagatattggatgtactatgagtattgatttatggttttgatccatttttctagcatctaagctttactcttaaatttaactttttcttggacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG