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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCTCAGATACACCATCACTGTCTGTTGAGAGAATGAGGGAAGCTCAAGCTCGTTTGCAGACACCATATCTTGTTCTTAGTGGTCATGTTAAACCAGGgtatgattttaactttacagactaataattcctgaagttttaatttaaaaactgtttacatgtaataaaatgagaaactaggagcatgcatcatttcatt...

Basic information

species Glycine max
transcript GLYMA07G34600.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G34600.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G16780.1 (Arabidopsis thaliana), 5'ss of exon 11
AGAGCTCAGATACACCATCACTGTCTGTTGAGAGAATGAGGGAAGCTCAAGCTCGTTTGCAGACACCATATCTTGTTCTTAGTGGTCATGTTAAACCAGGgtatgattttaact--ttacagactaataattcctgaagtt-ttaatttaaaaactgtttacatgtaataaaatgagaaactaggagcatgcatcatttcatt
| | |||||| |||||||| | ||||||| | |||||||| |||||||||||||  ||| | || || || ||||| || ||||| ||||| ||||||||||||   | |   |  |||   | |  || ||  || | |   | |  || ||        ||  |  |  ||  |  |  ||   |  | ||| |||     
AAAACTCAGACACACCATCGCAGTCTGTTCAAAGAATGAGAGAAGCTCAAGCTCAATTGAAAACTCCTTACCTTGTCCTCAGTGGCCATGTCAAACCAGGgtatacatatgcttcattattcagttttagtttttggaatcactgagatacaagtgacgctcagtttctttaactaacacatatttgt-tacattattcag--

upper sequence: GLYMA07G34600.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv11s0078g00440.t01 (Vitis vinifera), 5'ss of exon 11
AGAGCTCAGATACACCATCACTGTCTGTTGAGAGAATGAGGGAAGCTCAAGCTCGTTTGCAGACACCATATCTTGTTCTTAGTGGTCATGTTAAACCAGGgtatgatttt--aactttacagactaataattcctgaagttttaatttaaaaactgtttacatgtaataaaatgagaaactaggagcatgcatcatttcatt--
|||  ||||| || ||||||| |||||||||| | |||||||||||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||||| ||||  |||  | ||  ||  | |||  |  | | || |||||  |    |  |  ||  || ||| | |   | ||        |  | ||   |  
AGAATTCAGACACCCCATCACAGTCTGTTGAGCGGATGAGGGAAGCTCAAGCTCGGTTGAAGACACCCTATCTTGTTCTTAGTGGGCATGTTAAACCAGGgtatgctttttgaacccttcatgct--tcattttttta-tatttatttatgattcatcaaagtggcatgaaa-gtggttcgagagaaggaaaaaagttttctgg