1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTGGAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattgtcttaatttatttgtaccataacttcttattaaattggttgaaacttgagaagttattgttcattctcgagtataaaccactctggctag...
species | Glycine max |
transcript | GLYMA07G32190.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|11688177|gb|BF595853.1|BF595853
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|193672591|gb|FK615909.1|FK615909
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: ATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|7589757|gb|AW705525.1|AW705525
genomic: ATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|193396217|gb|FK363610.1|FK363610
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: ATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|208047241|gb|GD844338.1|GD844338
genomic: ATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|208221029|gb|GE020699.1|GE020699
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAAACCTAGGAGGATGTEST: gi|15204849|gb|BI427617.1|BI427617
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAA-CCT-GGAGGATGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|207733012|gb|GD712740.1|GD712740
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: ATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|7691785|gb|AW759906.1|AW759906
genomic: ATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGACGAAGAGAAGCGA CAAGCGAAAGCAGCAEST: gi|208281234|gb|GE077610.1|GE077610
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCA
EST: AGTGGTCCCTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|208089275|gb|GD890302.1|GD890302
genomic: AGTGG-CACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|14999814|gb|BI320628.1|BI320628
genomic: GGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGCATGGAGGAAGAGAAACGA CCAGCCAAAGCAGCAEST: gi|193415327|gb|FK375821.1|FK375821
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCA
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTEST: gi|20449753|gb|BQ253877.1|BQ253877
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|9260012|gb|BE348159.1|BE348159
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|31561027|gb|CD486865.1|CD486865
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|16346698|gb|BI972293.1|BI972293
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCAEST: gi|14011803|gb|BG726725.1|BG726725
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCA
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGEST: gi|193730098|gb|FK663084.1|FK663084
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTG
EST: GGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|6481839|gb|AW201110.1|AW201110
genomic: GGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGEST: gi|26269373|gb|CA820436.1|CA820436
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTG
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|31475923|gb|CD417951.1|CD417951
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|10237564|gb|BE806452.1|BE806452
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|193396232|gb|FK362729.1|FK362729
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: AGCCGGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|208038294|gb|GD837078.1|GD837078
genomic: AGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: ATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|193303693|gb|FK271669.1|FK271669
genomic: ATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: ATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGTEST: gi|10232365|gb|BE801253.1|BE801253
genomic: ATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
EST: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGA CAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
genomic: GAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattg ... ttgttgtcagCAAGCGAAAGCAGCATAAGAAGTTGTCAACCTGGAGGATGTCTTGCACTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTGGAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAgtgagtattgtcttaatttatttgtaccataacttcttattaaattggttgaaacttgagaagttattgttcattctcgagtataaaccactctggctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC