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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCCATTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGTGCTAGGTTTATATATGATGAGTTAATGAAGgtaagggtttatgacttgctatttctgcttctttacttcaccaccttacaaatatgtgctaaattaaaatctcttctcttcag

Basic information

species Glycine max
transcript GLYMA07G30150.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 12
GTCCCATTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGTGCTAGGTTTATATATGATGAGTTAATGAAGgtaagggtttatgacttgctatttctgcttctttacttcaccaccttacaaatatgtgctaa-attaaaatctcttctcttcag
|| || |||||||| |||||  | ||||| ||| ||||  | || |||||||| |||||||||||||| || ||||||||||||||| | ||||||     || | |||||  |||| |      ||    ||| |   ||   || | |   |    | || |   | | || |||
GTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAGgtagaaaattcttacttggcattt-tatgctcttggggcactattatatgcatctttaacactgatcaagtgattccactccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326358|gb|FK015890.1|FK015890
EST:     TGGATCCAAGTCTTCAGTGTGCTAGGTTTATATATGATGAGTTAATGAAG                         ATCAGCCATCGATGTATGGTCACTGAATTGCAGCGGTTCCCTTTCTTGAGA
genomic: TGGATCCAAGTCTTCAGTGTGCTAGGTTTATATATGATGAGTTAATGAAGgtaagggttt ... ttctcttcagATCAGCCATCGATGTATGGTCACTGAATTGCAGCGGTTCCCTTTCTTGAGA
EST: gi|7146674|gb|AW508596.1|AW508596
EST:     TGGATCCAAGTCTTCAGTGTGCTAGGTTTATATATGATGAGTTAATGAAG                         ATCAGCCATCGATGTATGGTCACTGAATTGCAGCGGTTCCCTTTCTTGAGA
genomic: TGGATCCAAGTCTTCAGTGTGCTAGGTTTATATATGATGAGTTAATGAAGgtaagggttt ... ttctcttcagATCAGCCATCGATGTATGGTCACTGAATTGCAGCGGTTCCCTTTCTTGAGA