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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTGAAATTGAGCAGGGACTTGCTGATGCTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATGgtaagagtagcacctagagttctaatgttctatcttctgtattcttttcttcttgctggtcaagtaaattaacaaatgcttctttgccatttttag

Basic information

species Glycine max
transcript GLYMA07G29630.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G29630.1 (Glycine max), 5'ss of exon 11
lower sequence: AT2G19940.1 (Arabidopsis thaliana), 5'ss of exon 11
TTCCTGAAATTGAGCAGGGACTTGCTGATGCTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATGgtaagagtagcacctagagttctaatgttctatcttctgtattcttttcttcttgctggtcaagtaaattaacaaatgcttctttgccatttttag
||||||||||||| |||||| |  |||||| | ||   ||||||||||| || |||||||| |||||||| || |||||||||  | ||   | |||  |  |    ||||||       ||| ||  | |    |   | || | | |   ||  || ||   |           
TTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATGgtacaaataat-cttagcatgat----ttctata------atttttaaccttaaacccattaactga-tcctcagttgtttgggtag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57575030|gb|CX548005.1|CX548005
EST:     CTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATG                         AGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
genomic: CTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATGgtaagagtag ... ccatttttagAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
EST: gi|193389707|gb|FK355796.1|FK355796
EST:     CTGTTAGTTTTTACACCACATCTAATTCCAATG                         AGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
genomic: CTGTTAG-TTTTACACCACATCTAATTCCAATGgtaagagtag ... ccatttttagAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
EST: gi|207810719|gb|GD782052.1|GD782052
EST:     TTCAAAAGTAACTGTTAGTTTTACACCACACCTAATTCCAATG                         AGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
genomic: TTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATGgtaagagtag ... ccatttttagAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
EST: gi|208134794|gb|GD927463.1|GD927463
EST:     CTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATG                         AGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
genomic: CTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATGgtaagagtag ... ccatttttagAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
EST: gi|58016973|gb|CX703715.1|CX703715
EST:     CTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATG                         AGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA
genomic: CTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATGgtaagagtag ... ccatttttagAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGA