Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatagtctgtactgtacattccaaatgggatgttatctgtattgaagttaaagtttctacctgtgagtgttatctgtattgcttttggttacata...

Basic information

species Glycine max
transcript GLYMA07G18160.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 11
GTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatagtctgtactgtacattccaaatgggatgttatctgtattgaagttaaagtttctacctgtgagtgttatctgtattgcttttggttacata----------
 |||||||  ||||| ||||||||||| || || ||||| ||||| |||||||||||||| || |||| ||| |  ||||  || | | |         |   || | | | |||   | || ||     |   | |  |  ||||  ||      || |||  |           
ATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGCCTCATTCTTCTTTGTTCAATCAGgtaagtctc-tctggtctcttcttct-------gcctttgtatctgttgggatcaa-gtgcactctgataaacgg-atctagatcaagcatgtttatgtgcatacattaa

upper sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 11
GTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatagtctgtactgtacattccaaatgggatgttatctgtattgaagttaaagtttctacctgtgagtgttatctgtattgcttttggttacata-----------------------------------------------------------
|||||| |  ||||| |||||||| ||||| ||||||||||| |||||||| || |||||||| ||||  | ||  |  || || || ||||   |   ||| | || ||  |||     |      | |   | || | |||    ||||   | | |  | |||                                                           
GTGGGGTGCCACTCTTATGAACTCCTTTCTTTTTAATGTGGGACTTATTCTCCTGTGTTCCATCAGgtttgcatgtttagtcctctaaattcattaacagatataat-tgggttgggaccagcaccacaaggggggactcttactgttattttatgtaga-atatatttccagaccttggtagatgtttatctataatcattgttgttggctcctccaatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337760|gb|CO981626.1|CO981626
EST:     ATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
EST: gi|15814514|gb|BI786789.1|BI786789
EST:     ATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
EST: gi|254348009|gb|GR854258.1|GR854258
EST:     ATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
EST: gi|51335080|gb|CO978946.1|CO978946
EST:     ATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatag ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC