1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatgtatagatgtacttataacacttggtttttttttaatagatgttctattatgtagcatatcattatagggtgattatcatgcacttaaaaa...
species | Glycine max |
transcript | GLYMA07G09270.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|192327720|gb|FK021355.1|FK021355
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|19346368|gb|BM891248.1|BM891248
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|8284412|gb|BE021971.1|BE021971
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|254339874|gb|GR857999.1|GR857999
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: GGATAAGCTTGGAAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|21256350|gb|BQ453238.1|BQ453238
genomic: GGATAAGCTTGGAA-GGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: ACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|151399677|gb|EV269548.1|EV269548
genomic: ACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|17023662|gb|BM094696.1|BM094696
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|58017137|gb|CX703879.1|CX703879
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|8284214|gb|BE021773.1|BE021773
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|192333445|gb|FK023974.1|FK023974
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGTCACAGGAGCAACTTCACTTGTATCAAAC
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatgtatagatgtacttataacacttggtttttttttaatagatgttctattatgtagcatatcattatagggtgattatcatgcacttaaaaa
- - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - AAGGAA