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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGgtttgtgcttaatattcaaattcaaaagttaacttagttgtattgtatatttacatgtaacatatatatattttatactttgtcaatatgctgttcaatt...

Basic information

species Glycine max
transcript GLYMA07G08030.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os04g58620.1 (Oryza sativa), 5'ss of exon 12
TTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGgtttgtgcttaatattcaaattcaaaagttaacttagttgtattgtatatttacatgtaacatatatatattttatactttgtcaatatgctgttcaatt---
|||||||||| || | || |||||||| || || |||||||||||||| || ||||||||||| || ||||| |||||  | ||||| ||||||||||||||  |  ||    ||  ||  |||  | ||   ||   | | |     |  |    | |   |   |  || || ||  | |  |||||     |  |     
TTTGGCTGGTCTATTGCTAGCAGAAACAGAATTCTCCTTACAGGTTGAGTCGGATATTGCTCCTTACCGTGGTCTTCTGTTAGGTCTTTTCTTTATGACGgtaaggactctgaatataa--tcatcattttttttgtctatgtcaatgagctgataggagtttgcttcaatgtt-tatatggataatataacaatgtacatat

upper sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G058948_T01 (Zea mays), 5'ss of exon 11
TTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGgtttgtgcttaatattcaaattcaaaagttaacttagttgtattgtatatttaca-tgtaacatat-atatattttatactttgt--caatatgctgttcaatt------------------------------------------------------------------------------------------------
|||||||||| |  |||| |||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| |||||  | || || ||||||||||||||  || |   | ||  || | ||  |  |  ||||      |  |||  |   | ||  |  | |    | ||    |||||||  ||  ||  ||  ||                                                                                                   
TTTGGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCCTTACAGGTTGAGTCAGATATAGCTCCTTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgtgagtaccgtaaatataattgcattaaatttcttaaacac-tgatatgctgctagtgctatgtttcgagtgttcctaactttgtaccatcatcatgggcatcaaacaaattaagttatcacagaccttgctactctaatagttactacatttaacttcatattaaacataattaaccattttttggctgggaactgaag

upper sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G093643_T01 (Zea mays), 5'ss of exon 12
TTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGgtttgtgcttaatattcaaattcaaaagttaacttagttgtattgtatatttacatgtaacatatatatattttatactttgtcaa---tatgctgttcaatt
||| |||||| |  |||| |||||||| ||||| || || |||||||| || ||||| ||||| |||||||| |||||  | || || ||||||||||||||  || ||    ||  || | ||  |   |   |   | ||      || |||   |||  |   ||| ||| |    ||   ||   ||| |  |     |
TTTAGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCATTGCAGGTTGAGTCAGATATAGCTCCCTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgtgagtactgtgaatataattgcattaagaattatttctttaacactgatatactgctaatgt---tatgtttcaagtgttcctaaccttataccatcatcat

upper sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 12
TTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGgtt-tgtg-----cttaatattcaaattcaaaagttaacttagttgtattgtata------tttacatgtaacatatatatattt---tatactttgtcaatatgctgtt-caatt--------------------------------------------
|||||||||| |||| || ||||| || || ||||| || || || ||||| |||||||||||||||||||| |||||  |||| |||||||| ||||||||  | ||     | |||||      | || |  ||| | |   || |  | ||       | || ||| || |   |    |||   | |  | |   || || ||| |    ||                                            
TTTGGCTGGTCTACTCCTTGCAGAGACAGAATTTTCGTTGCAAGTAGAATCAGATATTGCTCCATATCGTGGTCTTCTGTTGGGACTCTTCTTCATGACGgtaatatgagtttcctaataactttttccatagtttatcatttctgaaaagaatgaggaactatagatggaaaaggaaaccttttacttgtgttctagtaagatcctgatattgttgtcaactgtaagcaaactaacaaaaagagttccattgatttcag

upper sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 10
TTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGgtttgtgcttaat-attcaaattcaaaagttaacttagttgtattgtatatttacatgtaacatatatatattttatactttgtcaatatgctgttcaatt---
|||||||||||| || || ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||| ||||||||  || ||| |  || | | ||| ||      | |   | |||   ||  | |||| |||      |   || ||| | |||    ||  |||||        
TTTGGCTGGTTTGCTTCTTGCAGAAACTGAATTTTCCTTACAGGTTGAATCAGATATTGCTCCATATCGTGGCCTTTTATTGGGTCTCTTCTTCATGACGgtaggttcttcaccatgccatttccaagagaggcatttatttatccaatcctaacatataaacctcgt---ttctattccttgaagttac-ctgtttggagaga

upper sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ07595 (Selaginella moellendorffii), 5'ss of exon 9
TTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGgtttgtgcttaatattcaaattcaaaagttaacttagttgtattgtatatttacatgtaacatatatatattttatactttgtcaatatgctgttcaatt
| | |||||  | ||  || ||||||| |||||  |  | || |||||||| |||||||| |||||||| || ||||| ||||| || ||||||||||| ||  ||| ||  |  || ||   |||   || |||    |   |   ||| |    ||||||  |  |                                
TCTTGCTGGACTCCTTTTGTCAGAAACCGAGTTCGCTCTGCAAGTTGAATCCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtt--tcctctaa---aaacaatatctt--ccgagctcattatctg-gcgtaacacctgcag-------------------------------

upper sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ10973 (Selaginella moellendorffii), 5'ss of exon 9
TTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGgtttgtgcttaatattcaaattcaaaagttaacttagttgtattgtatatttacatgtaacatatatatattttatactttgtcaatatgctgttcaatt
| | |||||  | ||  || ||||||| |||||  |  |||| |||||||| |||||||| |||||||| || ||||| ||||| || ||||||||||| ||  ||| ||  |  || ||    ||  |   |  || |  ||| | |        ||||||  |  |                                
TCTTGCTGGACTCCTTTTGTCAGAAACCGAGTTCGCTCTACAAGTTGAATCCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtt--tcctctaagaacaatatcttccgagct-cattatctg-----gcgtaacacctgcag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193570504|gb|FK526289.1|FK526289
EST:     CTGGGTCTCTTCTTTATGACG                         GTCGGAATGTCAATTGATCCAAAACTTCTTCTTTCAAACTTTCCAGTCATT
genomic: CTGGGTCTCTTCTTTATGACGgtttgtgctt ... gacttttcagGTCGGAATGTCAATTGATCCAAAACTTCTTCTTTCAAACTTTCCAGTCATT
EST: gi|193568042|gb|FK524379.1|FK524379
EST:     CTGGGTCTCTTCTTTATGACG                         GTCGGAATGTCAATTGATCCAAAACTTCTTCTTTCAAACTTTCCAGTCATT
genomic: CTGGGTCTCTTCTTTATGACGgtttgtgctt ... gacttttcagGTCGGAATGTCAATTGATCCAAAACTTCTTCTTTCAAACTTTCCAGTCATT
EST: gi|22540098|gb|BU089941.1|BU089941
EST:     TTCTTTATGACG                         GTCGGAATGTCAATTGATCCAAAACTTCTTCTTTCAAACTTTCCAGTCATT
genomic: TTCTTTATGACGgtttgtgctt ... gacttttcagGTCGGAATGTCAATTGATCCAAAACTTCTTCTTTCAAACTTTCCAGTCATT