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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAACGGTGGTTCCATGAGAGTGTGATGATAGTGgtgagtgttttaaagaacaatcccccgtctctaccattcttcacaaagcttgattttggcctcatacatgatgctgttttcctgttaaaattattattctccatacag

Basic information

species Glycine max
transcript GLYMA07G07610.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07610.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os02g57710.1 (Oryza sativa), 5'ss of exon 10
GTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAACGGTGGTTCCATGAGAGTGTGATGATAGTGgtgagtgttttaaagaacaatcccccgtctctaccattcttcacaaagcttgattttggcctcatacatgatgctgttttcctgttaaaattattattctccatacag
|| ||| ||||||||||||||||| ||||| ||||||||||||| ||||| ||| |||| ||   |||||| ||||||||||||||||| |||||  ||     | |  || |    |   || |    |||| |            ||  ||  | | |   |||||  || ||   ||   |   |  ||         
GTCGGATCTGTTCTTCTCAGTTGTTCCTTCTTATATGACATCTTTTGGGTTTTTATCTCCAAGATGTGGTTTCATGAGAGTGTGATGATTGTGgtaggtac---agatgactactttcatactgtgatgttctgc------------ttctgcaacttgcgaaatgctaattgccc--tagcgtc--tgctcgtag-----

upper sequence: GLYMA07G07610.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os06g51430.1 (Oryza sativa), 5'ss of exon 10
GTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAACGGTGGTTCCATGAGAGTGTGATGATAGTGgtgagtgttttaaagaacaatcccccgtctctaccattcttcacaaagcttgattttggcctcatacatgatgctgttttcctgttaaaattattattctccatacag
|| ||  | ||||| ||||| ||||||||| | |||||||||||||||||||||||||| ||  | ||||| |||||||| |||||||| ||||| ||| || |  | |   || |      |||   | |      |   | |  |||  ||    |   | |||||| | | ||  | |||                  
GTGGGTTCAGTTCTCCTCAGCTGTGCCTTCTTTTATGACATCTTCTGGGTGTTTGTCTCCAAGAGATGGTTTCATGAGAGCGTGATGATCGTGgtaagttttgtggaaatttattctagacttctggtaattggtg-atctcattgtttaagctaagttggttatgctggtgtgcttctcaaag-----------------

upper sequence: GLYMA07G07610.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 8
GTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAACGGTGGTTCCATGAGAGTGTGATGATAGTGgtgagtgttttaaagaacaatcccccgtctctaccattcttcacaaagcttgattttggcctcatacatgatgctgttttcctgttaaaattattattctccatacag
|| ||  | ||||||||| | ||||||||||| ||||| ||||||||||||||| |||| ||  | ||||| |||||||| |||||||| ||||| || || | ||||   |          ||| | |||        | | ||| ||| ||    || |  ||| || |||| | |  ||||                 
GTGGGTTCGGTTCTTCTCGGCTGTGCCTTCCTGTATGATATCTTCTGGGTGTTTATCTCCAAGAGATGGTTTCATGAGAGCGTGATGATTGTGgtaagcgtgtgaaagggga---------ttctgctatttggtg-gtatcctgaattttgctggttatagcatgttggtttcttctgcaaatag---------------

upper sequence: GLYMA07G07610.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G096343_T01 (Zea mays), 5'ss of exon 10
GTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAACGGTGGTTCCATGAGAGTGTGATGATAGTGgtgagtgttttaaagaacaatcccccgtctctaccattcttcacaaagc-ttgattttggcctcatacatgatgctgttttcctgttaaaattattattctccatacag
|| ||  | |  || ||  ||||||||||| ||||||||||||||||||| ||| |||| ||   || ||||||||| ||||||||||| |||||  || |     || || ||      |      |  | |   | |  | |  | |||   ||  ||     ||||   |  ||    |      |  ||| | | |||
GTGGGTTCAGCCCTCCTGGGTTGTGCCTTCTTATATGACATCTTCTGGGTTTTTATCTCCAAGATGTTGTTCCATGAAAGTGTGATGATTGTGgtatgtatgaatgagtactatgatgtttgcaattcgctgtctgctagtcatctagtttcttcttctatgatttgctagatatctagctatgcatgtggtctgcttgcag

upper sequence: GLYMA07G07610.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G01650.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAACGGTGGTTCCATGAGAGTGTGATGATAGTGgtgagtgttt----taaagaacaatcccccgt---------ctctaccattcttcacaaagcttgattttggcct-catacatgatgctgttttcctgttaaaattattattctccatacag--------------
|| ||   |||||||||||| ||||||||| | ||||||||||||||||| ||||| || ||| ||||||||| ||| || |||||||| ||||| ||| |||    |      ||  ||  | |         || |   |    |  |||      ||  |   ||   | |   |  ||| | |  |   | |||| |   |||     ||               
GTCGGGTTTGTTCTTCTCAGCTGTGCCTTCATGTATGACATCTTCTGGGTTTTTGTTTCAAAATGGTGGTTCCGTGAAAGCGTGATGATTGTGgtaagtttttcttttttgctccagaccatcatgcaagaagactttgttagatattccaactacacatacttatctgtctgctccacactgatattatcggagaattgtacgtcttttcccattttcccacatatag

upper sequence: GLYMA07G07610.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv15s0046g02460.t01 (Vitis vinifera), 5'ss of exon 10
GTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAACGGTGGTTCCATGAGAGTGTGATGATAGTGgtgagtgttttaaagaacaatcccccgtct-ctaccattcttcacaaagcttgattttggcctcatacatgatgctgttttcctgtta--aaattat-------tattctccatacag
|||||||||||||||||||||||||| ||| | || |||||||| ||||| ||||| |||||| |||||||| |||||||||||||||| ||||| |||  |||    || | |     | |  | |  |   || | |  |||    |||||      | ||    ||| |  ||  |||   ||||||       | || ||  || ||
GTTGGAACTGTTCTTCTCAGTTGTGCGTTCTTGTACGACATCTTTTGGGTTTTTGTTTCTAAATGGTGGTTCAATGAGAGTGTGATGATTGTGgtaagtagtttctccaaaacttgttagcccaccaatacatttgaaacggctgatgtttggtacttgagat--ctctgctgcccaattacagaattatgtaattgtgttttctgtatag