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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGACCTGCAGATTGCTACTGGATCCTTCAGTGTGGAGCAACTTCTTGGTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGAGGGAAAGgtattccttacctgttgtttgctgcaaatacacctctatatctaatgctggtagcagagatatataattccaaaatagaattgtcacattatataatttt...

Basic information

species Glycine max
transcript GLYMA07G05230.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05230.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv09s0002g00150.t01 (Vitis vinifera), 5'ss of exon 11
AGCTGACCTGCAGATTGCTACTGGATCCTTCAGTGTGGAGCAACTTCTTGGTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGAGGGAAAGgtat-tccttacctgttgtttgctgcaa-atacacctctata-tctaatgctggtagcagagatatataattccaaaatagaattgtcacattatataatttt
 || ||||| ||||| ||||| ||   ||| ||||| ||  | ||| ||||||||||||||||||||||||| || |  |||||||||||||| |||||||||  |  ||   |  | |||          |  |  || || | | ||||  ||   |   ||   ||  ||| ||   | |  |   |||| |    ||||
TGCAGACCTACAGATGGCTACAGGTAGCTTTAGTGTCGAAAACCTTATTGGTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAGgtacatatttgtttaatatttttcatgttgcatgctgctgtagtgtcatgcatgttttacttatccctatatcctaagctgcaaag---catttttggttttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7686042|gb|AW756690.1|AW756690
EST:     GTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGAGGGAAAG                         GTTCTTGCCGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATATGTCT
genomic: GTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGAGGGAAAGgtattcctta ... aatgttgtagGTTCTTGCCGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATATGTCT
EST: gi|7685767|gb|AW756415.1|AW756415
EST:     GTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGAGGGAAAG                         GTTCTTGCCGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATATGTCT
genomic: GTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGAGGGAAAGgtattcctta ... aatgttgtagGTTCTTGCCGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATATGTCT
EST: gi|208313277|gb|GE110933.1|GE110933
EST:     GTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGAGGGAAAG                         GTTCTTGCCGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATATGTCT
genomic: GTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGAGGGAAAGgtattcctta ... aatgttgtagGTTCTTGCCGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATATGTCT
EST: gi|10709647|gb|BF009371.1|BF009371
EST:     CTCAATTTGATGAGGGAAAG                         GTTCTTGCCGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATATGTCT
genomic: CTCAATTTGATGAGGGAAAGgtattcctta ... aatgttgtagGTTCTTGCCGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATATGTCT
EST: gi|22540779|gb|BU090630.1|BU090630
EST:     GTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGAGGGAAAG                         GTTCTTGCCGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATATGTCT
genomic: GTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGAGGGAAAGgtattcctta ... aatgttgtagGTTCTTGCCGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATATGTCT
EST: gi|23734067|gb|BU765250.1|BU765250
EST:     GTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGAGGGAAAG                         GTTCTTGCCGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATATGTCT
genomic: GTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGAGGGAAAGgtattcctta ... aatgttgtagGTTCTTGCCGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATATGTCT