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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGATTATGTGGCAGCAACCTCTGGTCCTGGTCTATCACCAAGTTCTTCAGTTGGTTCAATGTCTTCGGAAAAATCAACTCTGAATCCCAATGCCAAGgtgggaaagtacaagattaacttttaaaataggaaatactgaaacagaacctacaaatgatggccttttattttaaggtagacacaaattttgttttttatattactggcatttctcagagctttcccttttctgtttttcttttgttgttgtcag

Basic information

species Glycine max
transcript GLYMA07G04060.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193358971|gb|FK325401.1|FK325401
EST:     CAGTTGGTTCAATGTCTTCGGAAAAATCAACTCTGAATCCCAATGCCAAG                         GAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACAT
genomic: CAGTTGGTTCAATGTCTTCGGAAAAATCAACTCTGAATCCCAATGCCAAGgtgggaaagt ... ttgttgtcagGAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACAT
EST: gi|22524614|gb|BU083425.1|BU083425
EST:     CAGTTGGTTCAATGTCTTCGGAAAAATCAACTCTGAATCCCAATGCCAAG                         GAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACAT
genomic: CAGTTGGTTCAATGTCTTCGGAAAAATCAACTCTGAATCCCAATGCCAAGgtgggaaagt ... ttgttgtcagGAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACAT
EST: gi|21677086|gb|BQ629437.1|BQ629437
EST:     CAGTTGGTTCAATGTCTTCGGAAAAATCAACTCTGAATCCCAATGCCAAG                         GAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACAT
genomic: CAGTTGGTTCAATGTCTTCGGAAAAATCAACTCTGAATCCCAATGCCAAGgtgggaaagt ... ttgttgtcagGAGTTCAGGCTCAACCCTAATGCAAAGAGTTTTGTTCCATCTCAATCACAT