Sequence
atgc intronic sequence ATGC exonic sequenceCTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCTGGGGAGAACTATTTCTTTCATTCTGGGCAGgttagttattagtttatttgtgctgtgcaatttgaaaattgtgtaatctgaaatttatttttgaactttaag
Basic information
species | Glycine max |
transcript | GLYMA07G02290.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 5'ss of exon 12
CTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCTGGGGAGAACTATTTCTTTCATTCTGGGCAGgttagttattagtttatttgtgctgtgcaatttgaaaattgtgtaat---ctgaaatttatttttgaactttaag------------
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CTTGCTCGGACCTGTTATAACTTCTACCAAACAACTCCTACAAAGTTGGCTGGGGAGAATTATTTTTTCCATACTGGACAGgtagcaaggcagctc--ttattttattctctataataatcacgtactattccatcatttatctctaaatgatagcttcttaatttag
upper sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G21160.1 (Arabidopsis thaliana), 5'ss of exon 12
CTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCTGGGGAGAACTATTTCTTTCATTCTGGGCAGgttagttattagtttatttgtgctgtgcaatttgaaaatt----gtgtaatctgaaatttatttt---tgaactttaag
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CTTGCGTGGACATGTTATAACTTTTACCAATCAACTCCAACAAAACTGGCTGGGGAGAATTATTTCTTCAACTCTGGGAGTgtatgtcatttgcctgtctttttcaaacacattgtttattttatgcgttatttattgtttagtatacatgatgattcag
upper sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 5'ss of exon 12
CTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCTGGGGAGAACTATTTCTTTCATTCTGGGCAGgttagttattagtttatttgtgctgtgcaatttgaaaattgtgtaatctgaaatttatttttgaactttaag---------
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CTTGCCTGGACTTGTTATAACTTTTACCAATCGACACCAACGAAACTTGCTGGAGAGAACTATTTCTTCACTGCAGGGCAGgttggtaaatactttttgcgcatctgtttgtatgttagttg-gttggttatgtcgtatccataagcacatgattgtttcag
upper sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv09s0054g00230.t01 (Vitis vinifera), 5'ss of exon 7
CTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCTGGGGAGAACTATTTCTTTCATTCTGGGCAGgttagttattagtttattt------gtgctgtgcaatttgaaaattgtgtaatctgaaatttatttttgaactttaag-
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CTTGCCTGGACATGCTATAATTTCTACCAGTCAACACCAACAAAATTGGCTGGAGAGAACTATTTCTTCCACTCTGGGCAGgttagtttttctcttttctttttatatactagttatttcttttactgctcaatctcatttccatctaaaacatttacag
upper sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 12
CTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCTGGGGAGAACTATTTCTTTCATTCTGGGCAGgttagttattagtttattt------gtgctgtgcaatttgaaaattgtgtaatctgaaatttatttttgaactttaag-
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CTTGCCTGGACATGCTATAATTTCTACCAGTCAACACCAACAAAATTGGCTGGAGAGAACTATTTCTTCCACTCTGGGCAGgttagtttttctcttttctttttatatactagttatttcttttactgcccaatcttacttccatctaaaacatttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7924044|gb|AW830052.1|AW830052EST: CAACTCCAACAAAATTGGCTGGGGAGAACTATTTCTTTCATTCTGGGCAG GACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAG
genomic: CAACTCCAACAAAATTGGCTGGGGAGAACTATTTCTTTCATTCTGGGCAGgttagttatt ... gaactttaagGACATGAGTGTGGGTACATCATGGAACATACTGAGGCCAGAGACAGTTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCTGGGGAGAACTATTTCTTTCATTCTGGGCAGgttagttattagtttatttgtgctgtgcaatttgaaaattgtgtaatctgaaatttatttttgaactttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA