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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGCAGTTCAGCTGTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGgtaattatgaaattggaccatttgatgttcataacttgaaataatgtttgctatgtgcttatcctcaactcaatgagttattattgtgaaatttatag

Basic information

species Glycine max
transcript GLYMA07G02170.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02170.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G22330.1 (Arabidopsis thaliana), 5'ss of exon 11
GCATGCAGTTCAGCTGTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGgtaattatgaaattggaccatttgatgttcataacttgaaataatgtttgctatgtgcttatcctcaactcaatgagttattattgtgaaattt-atag
||| || || |||||  | || |||||||||||||| || |||||||||||||| ||||| || |||||||||  | |  | |||    || | |     ||||    ||  |||||    ||||||  | |  |    | | | |    | ||  | || ||| | ||
GCACGCTGTGCAGCTTCTGTCTCCTGCCAGCATTGTAGCGAAAATGAATGGCCGTGACAATATTTGCAAGgtagattt--acttgtgaaatcttagaacaataa----aacaaatgtaaaatatgtggatgttatg---ttattaatccttcatcttaaattttgacag

upper sequence: GLYMA07G02170.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g02910.t01 (Vitis vinifera), 5'ss of exon 11
GCATGCAGTTCAGCTGTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGgtaattatgaaattgg---accatttgatgt----------tcataacttga--aataatgtttgcta-tgtg-cttatcctcaactcaatgagt--tattattgtgaaatttatag---------------------
||||||||||||||| ||||||||||| |||||| | || |  |||||||| ||||||||||| ||||||||| |||   | |||    | |||||||| |          ||| || |  |  || ||      ||| |||| ||| || | ||    ||      ||||  || ||| |||| |                      
GCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGGTCGAGACAACATTTGCAAGgtacttacagatttgatgaatcatttgatatatgcatgctctcacaattctaccaacaaaaccccctagtgtgtcttgtcttgaaaaatattcaccctattcatgggaattttacatttctatttttacaatctatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209704962|gb|BW664839.1|BW664839
EST:     CACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAG                         GCGGATCTTGAGGAAGTTTGTACGCTATACTTGGATGCCAAATCATCAGCC
genomic: CACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGgtaattatga ... aaatttatagGCGGATCTTGAGGAAGTTTGTACGCTATACTTGGATGCCAAATCATCAGCC