Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCCCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCGTCTGTTAGTAATGCAGTGCTATGTGCCAAAGCATCGATGCTATTACAGgtgaggatgctaagaaatttctattaatttcctttaaatttataaaataaaataaaattctggataatcaaatatgtttattttgttgctgtacaaattt...

Basic information

species Glycine max
transcript GLYMA07G01940.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01940.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 11
ATCCCCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCGTCTGTTAGTAATGCAGTGCTATGTGCCAAAGCATCGATGCTATTACAGgtgaggatgctaagaaatttctattaatttccttta--aatttataaaataaaataaaattctggataatcaaatatgtttattttgttgctgtacaaattt
||| ||||| ||  |||  ||  | |||||||||||||| |||||||||||  | || || ||||| ||| |||| || |||||||| ||||| || ||||| || |  || | || |||| | |  | |   | |  |||    |  ||  |  |||| |      |||   |||| | | | ||||   | || ||    
ATCTCCTGAGAAACTAACAGGCTTAAATCTTTCCTTTGCTAATGGATTTCCTGCAGTCAGCAATGCTGTGTTATGCGCTAAAGCATCAATGCTTTTGCAGgttagtacactgaaaattttcaaatgttctggatgattaatgggaactattgataaaaagttcattgaattctatatttctttgttgtgtttatataatg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19268757|gb|BM885013.1|BM885013
EST:     CGTCTGTTAGTAATGCAGTGCTATGTGCCAAAGCATCGATGCTATTACAG                         AATGTGCCCCCTGCCATTCTCCCTA-GGTTCCTGAGGGAGCATAGATCAGA
genomic: CGTCTGTTAGTAATGCAGTGCTATGTGCCAAAGCATCGATGCTATTACAGgtgaggatgc ... tcttgtccagAATGTGCCCCCTGCCATTCTCC-TAAGGTTCCTGAGGGAGCATAGATCAGA
EST: gi|16348853|gb|BI974448.1|BI974448
EST:     CGTCTGTTAGTAATGCAGTGCTATGTGCCAAAGCATCGATGCTATTACAG                         AATGTGCCCCCTGCCATTCTCCTAAGGTTCCTGAGGGAGCATAGATCA
genomic: CGTCTGTTAGTAATGCAGTGCTATGTGCCAAAGCATCGATGCTATTACAGgtgaggatgc ... tcttgtccagAATGTGCCCCCTGCCATTCTCCTAAGGTTCCTGAGGGAGCATAGATCA
EST: gi|14126205|gb|BG790643.1|BG790643
EST:     CGTCTGTTAGTAATGCAGTGCTATGTGCCAAAGCATCGATGCTATTACAG                         AATGTGCCCCCTGCCATTCTCCTAAGGTTCCTGAGGGAGCATAGATCAGAA
genomic: CGTCTGTTAGTAATGCAGTGCTATGTGCCAAAGCATCGATGCTATTACAGgtgaggatgc ... tcttgtccagAATGTGCCCCCTGCCATTCTCCTAAGGTTCCTGAGGGAGCATAGATCAGAA
EST: gi|308098371|gb|HO760112.1|HO760112
EST:     CGTCTGTTAGTAATGCAGTGCTATGTGCCAAAGCATCGATGCTATTACAG                         AATGTGCCCCCTGCCATTCTCCTAAGGTTCCTGAGGGAGCATAGATCAGAA
genomic: CGTCTGTTAGTAATGCAGTGCTATGTGCCAAAGCATCGATGCTATTACAGgtgaggatgc ... tcttgtccagAATGTGCCCCCTGCCATTCTCCTAAGGTTCCTGAGGGAGCATAGATCAGAA