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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGGTTTGCTATTGGTTCTGCTGCTCTTGCATCTTTCCTTTTGTTTAGTGCTTATATGGACGAGGTTTCTGCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaactagcttcaacctaattaggcttaaatttgtttaggtccctatataatacatgctcggtttgttgatgttctgttttttttttaagagga...

Basic information

species Glycine max
transcript GLYMA07G00350.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G78920.2 (Arabidopsis thaliana), 5'ss of exon 11
CAAAGGGTTTGCTATTGGTTCTGCTGCTCTTGCATCTTTCCTTTTGTTTAGTGCTTATATGGACGAGGTTTCTGCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaactagcttcaacctaattaggcttaaatttgtttaggtccctatata-atacatgctcggtttgttgatgttctgttttttttttaagagga
 ||||||||||| ||||| |||||||| |||||||| |||||| | |||||||| ||||||||||||||||| || |||||| |||   |||| ||| ||||         ||  | || | |   |    |     | ||| ||    ||    | |  ||| ||||| |       |                      
GAAAGGGTTTGCCATTGGATCTGCTGCACTTGCATCATTCCTTCTCTTTAGTGCGTATATGGACGAGGTTTCAGCGTTTGCTAATGTGTCTTTCAAAGAGgtagatttcgtta--tgcatcgttgctgtattctcgat-gttgagacaacttctcatactcatcctcggataaaatcag----------------------

upper sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G16780.1 (Arabidopsis thaliana), 5'ss of exon 12
CAAAGGGTTTGCTATTGGTTCTGCTGCTCTTGCATCTTTCCTTTTGTTTAGTGCTTATATGGACGAGGTTTCTGCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaactagcttcaacctaattaggcttaaatttgtttaggtccctatataatacatgctcggtttgttgatgttctgttttttttttaagagga
 ||||||||||||||||| |||||||| |||||||| |||||| | |||||||| ||||||||||||||||| || |||||| ||| | |||||||| |||| |          |||     || ||  | ||    || ||    |||          ||| |||    || |  | || |  |    | | || ||  
AAAAGGGTTTGCTATTGGATCTGCTGCCCTTGCATCATTCCTTCTTTTTAGTGCGTATATGGACGAGGTTTCAGCGTTTGCTAATGTATCTTTTAAAGAGgtacattttttactctttggtgta-ttctgtttcctcttattccattccac-----tcgcatactcatcctgat--tcttgtcctcacatctaaacag--

upper sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 11
CAAAGGGTTTGCTATTGGTTCTGCTGCTCTTGCATCTTTCCTTTTGTTTAGTGCTTATATGGACGAGGTTTCTGCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaactagcttcaacctaattaggcttaaatttgtttaggtccctatataatacatgctcggtttgttgatgttctgttttttttttaagagga
||| || || || ||||| || || || || ||||| |||||| |||| |||||||||||||| ||||| || ||||||||||||||||||||||| |||||  |  ||     |||  | ||       ||| |   ||||||  | |     |||  ||    | | || || ||||  |  |    ||  |      
CAAGGGATTCGCCATTGGATCCGCGGCACTCGCATCCTTCCTTCTGTTCAGTGCTTATATGGATGAGGTGTCAGCATTTGCTCATGAACCTTTTAAGCAGgtaagtggacactactttgatct-------cttcatcgtgtttacattctc---taactca----ctgcttttttatgt--taatcaccttacag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286246|gb|BI470137.1|BI470137
EST:     GTGCTTATATGGACGAGGTTTCTGCATTTGCTCATGAACCTTTTAAACAG                         GTTGATATTGCTATTCCCGAAGTTTTCGTTGGTGGGCTGCTAGGTTCCATG
genomic: GTGCTTATATGGACGAGGTTTCTGCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaa ... tgagttgcagGTTGATATTGCTATTCCCGAAGTTTTCGTTGGTGGGCTGCTAGGTTCCATG
EST: gi|58016814|gb|CX703556.1|CX703556
EST:     GTGCTTATATGGACGAGGTTTCTGCATTTGCTCATGAACCTTTTAAACAG                         GTTGATATTGCTATTCCCGAAGTTTTCGTTGGTGGGCTGCTAGGTTCCATG
genomic: GTGCTTATATGGACGAGGTTTCTGCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaa ... tgagttgcagGTTGATATTGCTATTCCCGAAGTTTTCGTTGGTGGGCTGCTAGGTTCCATG
EST: gi|192305808|gb|FG995736.1|FG995736
EST:     GTGCTTATATGGACGAGGTTTCTGCATTTGCTCATGAACCTTTTAAACAG                         GTTGATATTGCTATTCCCGAAGTTTTCGTTGGTGGGCTGCTAGGTTCCATG
genomic: GTGCTTATATGGACGAGGTTTCTGCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaa ... tgagttgcagGTTGATATTGCTATTCCCGAAGTTTTCGTTGGTGGGCTGCTAGGTTCCATG
EST: gi|58015021|gb|CX701763.1|CX701763
EST:     GTGCTTATATGGACGAGGTTTCTGCATTTGCTCATGAACCTTTTAAACAG                         GTTGATATTGCTATTCCCGAAGTTTTCGTTGGTGGGCTGCTAGGTTCCATG
genomic: GTGCTTATATGGACGAGGTTTCTGCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaa ... tgagttgcagGTTGATATTGCTATTCCCGAAGTTTTCGTTGGTGGGCTGCTAGGTTCCATG