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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATATCTGGGCTTGTCCTCCATTAAAGGGGGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACCCCAAAATCCGATAAGCTACGTGAATGgtgagcgtaatagcttcagtatatacaaaatgagaaaaaaacttgtctatttattttccttgtacaatgtgattaggtttattcatctctaacttcagcatttgtcaacatgtttctgcag

Basic information

species Glycine max
transcript GLYMA07G00230.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os06g49130.2 (Oryza sativa), 5'ss of exon 10
GCTATATCTGGGCTTGTCCTCCATTAAAGGGGGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACCCCAAAATCCGATAAGCTACGTGAATGgtgagcgtaatagcttcagtatatacaaaatgagaaaaaaacttgtctatttattttccttgtacaatgtgattaggtttattcatctctaacttcagcatttgtcaacatgtttctgcag
| ||||| |||||||| |||||  | || || |||||||| ||||| |||||||||||||| |||||||| || ||||| || ||||| || ||| | |||| ||    |||| ||  | || ||                 |||| |||   | ||  | ||        ||| |     |    ||||  | |  |||      ||   |||||||   
GTTATATATGGGCTTGCCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACCAAAGTCTGATAAACTGCGTCAGTGgtaag-accatagatt-ggcatctatg---------------ttgt-tatccttgttaatagtgtggctgcatttgtggggtaatgctctgcccttggcagcaaaaaaatggtttctg---

upper sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 5'ss of exon 11
GCTATATCTGGGCTTGTCCTCCATTAAAGGGGGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACCCCAAAATCCGATAAGCTACGTGAATGgtgagcgtaatagcttcagtatatacaaaatgagaaaaaaacttgtctatttattttccttgtacaatgtgattaggtttattcatctctaacttcagcatttgtcaacatgtttctgcag
| || || ||||| || || || ||||| || |||||||| ||||| || |||||||| || |||||||| || ||||||||||| ||  |  | || |||| ||        | |  ||  | ||    |  |  |      |  || ||   | | || ||  |   |||||   | |  |   || ||   ||||                       
GTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGgtaag-------acctttgttgacact---tctgttactctgctcacttttagctcttctagttta-catgatt---tctgatgtactttacactcag-----------------------

upper sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G139977_T02 (Zea mays), 5'ss of exon 4
GCTATATCTGGGCTTGTCCTCCATTAAAGGGGGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACCCCAAAATCCGATAAGCTACGTGAATGgtgagcgtaatagcttcagtatatacaaaatgagaaaaaaacttgtctatttatt-ttccttgtacaatgtgattaggtttattcatctctaacttcagcatttgtcaacatgtttctgcag
| || || ||||||||||| || || ||||| |||||||| || |||||||||||||| || ||||| || || || ||||| ||||| || ||||| |||| ||| | | ||   || |  ||            | |  ||   | | || |  |  ||| ||||    |                                                  
GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaagccttagagacacaattgatcttgttgcttttagatcctccaccagttctaatgtcttttacacccag--------------------------------------------------

upper sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G16710.1 (Arabidopsis thaliana), 5'ss of exon 11
GCTATATCTGGGCTTGTCCTCCATTAAAGGGGGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACCCCAAAATCCGATAAGCTACGTGAATGgtgagcgtaatag-cttcagt-atatacaaaatgagaaaaaaacttgtctatttattttccttgtacaatgtgatta-ggtttattcatctctaacttcagcatttgtcaacatgtttctgcag
|||| || ||||||||||| ||| | ||||| || ||||||||  |||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||| ||  |||| | |||  || || | |   || | |       | |   | |  ||| | |  | |||| || |   ||| ||  ||                                    
GCTACATATGGGCTTGTCCACCACTGAAGGGTGAGGATTATATCCTATATTGCCATCCAGAAATTCAGAAAACACCAAAGTCTGATAAACTACGGGAATGgtcagtctaattgtctttggtgattttcttcat-acagttttcgtaggaaaatcctttacatcctccaatttgctcctggtctacacag-----------------------------------

upper sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 11
GCTATATCTGGGCTTGTCCTCCATTAAAGGGGGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACCCCAAAATCCGATAAGCTACGTGAATGgtgagcgtaatagcttcagtatatacaaaatgagaaaaaaacttgtctatttattttccttgtacaatgtgattaggtttattcatctctaac-ttcagcatttgtcaacatgtttctgcag
||||||| ||||| || || ||  | ||||| |||||||||||||||||||||||||| |||||||||||||| |||||  | ||||| ||| | |||||||       || |    | |||||||    |      || |||||| | || |  |       | |||   |||   | || | ||   |||   ||     || |||              
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgt-------atgg----aatatatact---ttcctgtaatacttgttt-ttcacgtgtaagagagaat---attgcatataatgatgcataatactccttccttttcag-------------

upper sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G79000.1 (Arabidopsis thaliana), 5'ss of exon 12
GCTATATCTGGGCTTGTCCTCCATTAAAGGGGGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACCCCAAAATCCGATAAGCTACGTGAATGgtgagcgtaatagcttcagtatatacaaaatgagaaaaaaacttgtctatttattttccttgtacaatgtgattaggtttattcatct-ctaacttcagcatttgtcaacatgtttctgcag
|||| || ||||||||||| ||  | ||||| || |||||||| |||||||| ||||||||||||||||| || |||||||| ||||| ||||| || |||| ||   | |  | |   |             |  |  |||||     |  | |||| |   | || || |||    | || || || |  || |    ||| |                 
GCTACATATGGGCTTGTCCGCCGCTGAAGGGCGAGGATTATATCTTATATTGTCATCCAGAAATTCAGAAGACGCCAAAATCTGATAAACTACGAGAGTGgtcagttcatttaccttttt-------------gggatgaactt---cgtaaactttcatatgaaaaagtcatttacatcatccaactgcccacgttgttattcgcag--------------

upper sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
GCTATATCTGGGCTTGTCCTCCATTAAAGGGGGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACCCCAAAATCCGATAAGCTACGTGAATGgtgagcgtaat-agcttcagtatatacaaaatgagaaaaaaacttgtctatttattttccttgtacaatgtgattaggtttattcatctctaacttcagcatttgtcaacatgttt-ctgcag
||||||| |||||||||||||| || ||||| ||||| ||||| || ||||||||||| |||||||||||||| |||||||| ||||| ||  | |||||||||| ||| | | | | || | |||  || |  |||  |   |  |   || | ||||||   | ||  |  |     |   | |||  |    |  |  |     ||  | | |  | |||
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgagagtagttatcgttagaaaata-gaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag