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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttcaattgcgtatatattgccttatataataaacagttggatataattattttgtaccagagggatacattctccagttataatttcacattgagatgatattagtatttgtgctgaattgcag

Basic information

species Glycine max
transcript GLYMA06G45160.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162286177|gb|FC456625.1|FC456625
EST:     AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
EST: gi|31474417|gb|CD416445.1|CD416445
EST:     AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGATTTGNCCTTTTCTGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
EST: gi|209724206|gb|BW658112.1|BW658112
EST:     AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
EST: gi|22928614|gb|BU545753.1|BU545753
EST:     AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
EST: gi|9899156|gb|BE608183.1|BE608183
EST:     AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
EST: gi|193318264|gb|FK285828.1|FK285828
EST:     AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGGTTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
EST: gi|192320764|gb|FK013854.1|FK013854
EST:     AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG                         ATATTTTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
EST: gi|209700002|gb|BW661218.1|BW661218
EST:     AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
EST: gi|254347258|gb|GR853507.1|GR853507
EST:     AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
EST: gi|21887940|gb|BQ741153.1|BQ741153
EST:     AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGATTTGGCCT
genomic: AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCCT
EST: gi|209723674|gb|BW662569.1|BW662569
EST:     AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
EST: gi|15284739|gb|BI468630.1|BI468630
EST:     AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
EST: gi|31459116|gb|CD401144.1|CD401144
EST:     AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGC