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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGGTTAAGGAGTTTGTAGCTGCCAGCGATGAAGAGAAGAAATCCATGTTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaataaacatcatccttctagaacatttgcttttagttatgtcacttgagaatagtttaattttcatttttgtgttgcatatgttctgcaatctttgcccaaaataagaaactagatgcggtaatctactaatccttttttttttatcattag

Basic information

species Glycine max
transcript GLYMA06G24520.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208046835|gb|GD846871.1|GD846871
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|208319590|gb|GE110755.1|GE110755
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|208279004|gb|GE079161.1|GE079161
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTAGGAAAAAGGTT
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTT-GGAAAAAGGTT
EST: gi|208067430|gb|GD865294.1|GD865294
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGG-AAGAGTTACTTGGAAAGCTGCCAAGAATTACTTGGAAAAAGGTT
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTG-AAAGCTGCCAAGAATTACTTGGAAAAAGGTT
EST: gi|193709470|gb|FK642504.1|FK642504
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|193692531|gb|FK627664.1|FK627664
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|208215130|gb|GE014273.1|GE014273
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|193692555|gb|FK627674.1|FK627674
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|208232383|gb|GE035804.1|GE035804
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|207835746|gb|GD809173.1|GD809173
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|193451568|gb|FK421418.1|FK421418
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|193464344|gb|FK431852.1|FK431852
EST:     AAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: AAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|193703975|gb|FK645195.1|FK645195
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTGGTTAAGGAGTTTGTAGCTGCCAGCGATGAAGAGAAGAAATCCATGTTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaataaacatcatccttctagaacatttgcttttagttatgtcacttgagaatagtttaattttcatttttgtgttgcatatgttctgcaatctttgcccaaaataagaaactagatgcggtaatctactaatccttttttttttatcattag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG