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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTGATGAGGACTCTCCTCCAAGGAAAACAACCACCCATCGGCGGATGGCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATGgtgagtagtcttggtcttaagaattcaattaatttagaatacagtgtatggatttttctacagtcatcccatgatagatatcatatatgatatgataaga...

Basic information

species Glycine max
transcript GLYMA06G21900.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254345263|gb|GR855813.1|GR855813
EST:     GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATG                         GGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
genomic: GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATGgtgagtagtc ... gatgttccagGGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
EST: gi|58024376|gb|CX711117.1|CX711117
EST:     GCGGTTGTGTACGATAGTGATGAGGAATAAACTTGAGCTAGATTTTCATG                         GGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
genomic: GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATGgtgagtagtc ... gatgttccagGGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
EST: gi|6719478|gb|AW307125.1|AW307125
EST:     TACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATG                         GGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
genomic: TACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATGgtgagtagtc ... gatgttccagGGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
EST: gi|254345262|gb|GR855812.1|GR855812
EST:     GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATG                         GGAAGTGCAGCTATCTGATGCAG
genomic: GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATGgtgagtagtc ... gatgttccagGGAAGTGCAGCTATCTGATGCAG
EST: gi|58021318|gb|CX708059.1|CX708059
EST:     GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATG                         GGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
genomic: GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATGgtgagtagtc ... gatgttccagGGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
EST: gi|14125052|gb|BG789490.1|BG789490
EST:     TTGTGTACGATAGTGATGAGGACTAAACTTCCTTAAGCTAGATTTTCATG                         GGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
genomic: TTGTGTACGATAGTGATGAGGACTAAACTTG---A-GCTAGATTTTCATGgtgagtagtc ... gatgttccagGGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
EST: gi|6719458|gb|AW307105.1|AW307105
EST:     AACTTGAGCTAGATTTTCATG                         GGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
genomic: AACTTGAGCTAGATTTTCATGgtgagtagtc ... gatgttccagGGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
EST: gi|193696799|gb|FK637983.1|FK637983
EST:     GCGGTTGTGTACGATAGCGATGAGGACTAAACTTGAGCTAGATTTTCATG                         GGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
genomic: GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATGgtgagtagtc ... gatgttccagGGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
EST: gi|58014328|gb|CX701070.1|CX701070
EST:     GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATG                         GGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
genomic: GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATGgtgagtagtc ... gatgttccagGGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
EST: gi|192325644|gb|FK019500.1|FK019500
EST:     GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATG                         GGAAGTGCAGCTATCTGATGCAGC
genomic: GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATGgtgagtagtc ... gatgttccagGGAAGTGCAGCTATCTGATGCAGC
EST: gi|193457712|gb|FK425004.1|FK425004
EST:     GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATG                         GGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC
genomic: GCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATGgtgagtagtc ... gatgttccagGGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCC