Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCAgtatgtataatccaggccttaaatcgttttgtaaaatcaatgattatgggtgtgtgcacatatgtgtgtgcaatatttgaaattattagctattaagaatacggcctcccattccttttaattcaagttctttggtaaaaatgtag

Basic information

species Glycine max
transcript GLYMA06G20360.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G20360.2 (Glycine max), 5'ss of exon 11
lower sequence: AT3G47730.1 (Arabidopsis thaliana), 5'ss of exon 11
TTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCAgtatgtataatccaggccttaaatcgttttgtaaaatcaatgattatgggtgtgtgcacatatgtgtgtgcaatatttgaaattattagctattaagaatacggcctcccattccttttaattcaagttctttggtaaaaatgtag
|||||||| || ||||||||  |||||||| | ||||||||| ||||||||||||  || |||||  || | ||  | || || || || |||||||    |||     || |        | |      || |||   |  ||   || |     |    |||| ||    | ||| |    | | |||    | | |   || | |                            
TTTGATATTCTTTGGGATGCTTTGTCTGGTGAAGAACACCTCAAACTCTTTGCTAGCATCAAAGGGTTGCCACCTTCATCAATCAACTCGgtatgtac---ccaaatggtagaa------atgagtcggttggttagtcggttggttactt-caaatcaagaatacttttcctcatttgtcgcttaaaatgttactttctcgtcatatag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15662847|gb|BI700218.1|BI700218
EST:     TCCAACTCTTTGCTACTATTANAGGCCTGTCCCCAGCTTCCATAAAATCA                         ATTACCCAGACTTCATTAGCAGAGGTAAGACTCACGGATGCAGCCAAAGTG
genomic: TCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCAgtatgtataa ... aaaaatgtagATTACCCAGACTTCATTAGCAGAGGTAAGACTCACGGATGCAGCCAAAGTG
EST: gi|193669758|gb|FK612358.1|FK612358
EST:     TCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCA                         ATTACCCAGACTTCATTAGCAGAGGTAAGACTCACGGATGCAGCCAAAGTG
genomic: TCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCAgtatgtataa ... aaaaatgtagATTACCCAGACTTCATTAGCAGAGGTAAGACTCACGGATGCAGCCAAAGTG
EST: gi|193518779|gb|FK472752.1|FK472752
EST:     TCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCA                         ATTACCCAGACTTCATTAGCAGAGGTAAGACTCACGGATGC
genomic: TCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCAgtatgtataa ... aaaaatgtagATTACCCAGACTTCATTAGCAGAGGTAAGACTCACGGATGC
EST: gi|193661639|gb|FK602593.1|FK602593
EST:     TCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCA                         ATTACCCAGACTTCATTAGCAGAGGTAAGACTCACGGATGC
genomic: TCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCAgtatgtataa ... aaaaatgtagATTACCCAGACTTCATTAGCAGAGGTAAGACTCACGGATGC