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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTTGGAGCGTTCTGTGTCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaacatactatgttgaatatattgtttgtaatacttttaatattgcacctgaattgttcattgaattatgcag

Basic information

species Glycine max
transcript GLYMA06G14060.3
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208118644|gb|GD917893.1|GD917893
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|5677805|gb|AI938935.1|AI938935
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGGTGCTGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGGTGCTGTCAG
EST: gi|207847773|gb|GD818308.1|GD818308
EST:     ATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: ATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193558704|gb|FK512919.1|FK512919
EST:     ATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: ATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|208035089|gb|GD835475.1|GD835475
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCC-AAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193704191|gb|FK645271.1|FK645271
EST:     GGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: GGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|14011762|gb|BG726684.1|BG726684
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|207778588|gb|GD749375.1|GD749375
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|208124774|gb|GD924220.1|GD924220
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193559343|gb|FK513792.1|FK513792
EST:     ATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: ATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|208214545|gb|GE011980.1|GE011980
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193384185|gb|FK352627.1|FK352627
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193702039|gb|FK636013.1|FK636013
EST:     CCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: CCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|208233746|gb|GE035477.1|GE035477
EST:     ATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: ATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|207825482|gb|GD800567.1|GD800567
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGGTGCTGTCA
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGGTGCTGTCA
EST: gi|193532913|gb|FK488519.1|FK488519
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTG
EST: gi|207834765|gb|GD806442.1|GD806442
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193329754|gb|FK294486.1|FK294486
EST:     GATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: GATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|31468970|gb|CD410998.1|CD410998
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193693801|gb|FK629029.1|FK629029
EST:     ATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: ATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193358496|gb|FK324478.1|FK324478
EST:     CAAATCTTCTAG                         GTCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: CAAATCTTCTAGgtatacaaaa ... aattatgcagG-CCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|31311171|gb|CD396374.1|CD396374
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTTTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|207777615|gb|GD746666.1|GD746666
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|208164056|gb|GD959356.1|GD959356
EST:     ACCAATCAAATCTTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: ACCAATCAAATC-TTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193427711|gb|FK398371.1|FK398371
EST:     GATCTAGATCGTCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: GATCTAGATCG-CGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|208249117|gb|GE047162.1|GE047162
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193440226|gb|FK408571.1|FK408571
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|208176930|gb|GD976001.1|GD976001
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193571930|gb|FK529563.1|FK529563
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|10253540|gb|BE821306.1|BE821306
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|23726789|gb|BU761397.1|BU761397
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193467403|gb|FK432516.1|FK432516
EST:     GGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: GGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|208167455|gb|GD965121.1|GD965121
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGAT
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGAT
EST: gi|208141033|gb|GD935291.1|GD935291
EST:     AGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: AGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|207840155|gb|GD809620.1|GD809620
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|207781179|gb|GD752274.1|GD752274
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193551835|gb|FK506492.1|FK506492
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCG
EST: gi|193445833|gb|FK411720.1|FK411720
EST:     TATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|208198777|gb|GE000293.1|GE000293
EST:     CTAAGGTCTCGATCTAGATCGCGATCAGTATCACCAATC-AATCTTCT-G                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: CT-AGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|207749718|gb|GD718098.1|GD718098
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACG
EST: gi|193366413|gb|FK331113.1|FK331113
EST:     GATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: GATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193470327|gb|FK434644.1|FK434644
EST:     CAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: CAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193630136|gb|FK585305.1|FK585305
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193400197|gb|FK367866.1|FK367866
EST:     ATCAAATCTTCTTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: ATCAAATCTTC-TAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|193568053|gb|FK524390.1|FK524390
EST:     CTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: CTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|208149201|gb|GD945511.1|GD945511
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|207682724|gb|GD666355.1|GD666355
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
EST: gi|15199933|gb|BI424083.1|BI424083
EST:     TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG                         GCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG
genomic: TCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAG