1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGAAAGATTAAAGTTCCTTTCGTCTCCTCAGGGGAAGgtaaaaaattcttagtcctgtttctgtcattttttgcaagtatgaaatttttttcttcccttttttccccttcctcttttgatgatgattttcaatttttggtttccag
species | Glycine max |
transcript | GLYMA06G10180.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AACCTAGCGAAGCAGAAAGATTAAAGTTCCTTTCGTCTCCTCAGGGGAAG GATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTGEST: gi|23729064|gb|BU762615.1|BU762615
genomic: AACCTAGCGAAGCAGAAAGATTAAAGTTCCTTTCGTCTCCTCAGGGGAAGgtaaaaaatt ... tggtttccagGATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTG
EST: CTTTCGTCTCCTCAGGGGAAG GATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTGEST: gi|23064310|gb|BU579092.1|BU579092
genomic: CTTTCGTCTCCTCAGGGGAAGgtaaaaaatt ... tggtttccagGATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTG
EST: AACCTAGCGAAGCAGAAAGATTAAAGTTCCTTTCGTCTCCTCAGGGGAAG GATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTGEST: gi|17400562|gb|BM177344.1|BM177344
genomic: AACCTAGCGAAGCAGAAAGATTAAAGTTCCTTTCGTCTCCTCAGGGGAAGgtaaaaaatt ... tggtttccagGATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTG
EST: AACCTAGCGAAGCAGAAAGATTAAAGTTCCTTTCGTCTCCTCAGGGGAAG GATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTG
genomic: AACCTAGCGAAGCAGAAAGATTAAAGTTCCTTTCGTCTCCTCAGGGGAAGgtaaaaaatt ... tggtttccagGATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGAAAGATTAAAGTTCCTTTCGTCTCCTCAGGGGAAGgtaaaaaattcttagtcctgtttctgtcattttttgcaagtatgaaatttttttcttcccttttttccccttcctcttttgatgatgattttcaatttttggtttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC