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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGAAGTAAGTAATGTTCGTGGTAATACACAGAAGAAGATTGAAAAGCTTAGACAACTACTTTCTGGTCTTCTTAGTGAACTTACCTATTTTGATGAGgtatcaatctcacatgaagctgtattgtagtttattgttctttttgtttactcttttactttaattaatgatgcatcttgaagaaactatttatttccaacaattatatctagcaaattcttagaaggttcttcaactgtatgcttattgttgctatgtttcacttgtag

Basic information

species Glycine max
transcript GLYMA06G10090.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10090.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 11
TAGAGAAGTAAGTAATGTTCGTGGTAATACACAGAAGAAGATTGAAAAGCTTAGACAACTACTTTCTGGTCTTCTTAGTGAACTTACCTATTTTGATGAGgtatcaatctcacatgaagctgtattgtagtttattgttctttttgtttactcttttactttaattaatgatgcatcttgaagaaactatttatttccaacaattatatctagcaaattcttagaaggttcttcaactgtatgcttattgttgctatgtttcacttgtag
 ||||| ||||| | ||| ||||||   || |||||||| ||||||||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||   | | |    ||| ||        || ||  |    | || | ||| | | |  ||  |     ||  || |||  | | |   | ||  |   ||  |   | || ||  | |||  ||   | |  || |  |    | |  ||| | |||| |||||  ||
GAGAGATGTAAGAACTGTGCGTGGTGGAACCCAGAAGAAAATTGAAAAGCTTAGACAGCTTCTTTCTGGCCTTCTTAGTGAGCTTACCTATTTTGAAGAGgtatttgtttgattcaaagttg----actattgatcttgtcatctgctaactttctgagctttgtctgacatttattttgttgcatcggat-atagctttcagat---tgtaacagttgcttttaaatatttataatttgagatgtgt--ttgatttgttacactttcag

upper sequence: GLYMA06G10090.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S58_188V6.1 (Physcomitrella patens), 5'ss of exon 11
TAGAGAAGTAAGTAATGTTCGTGGTAATACACAGAAGAAGATTGAAAAGCTTAGACAACTACTTTCTGGTCTTCTTAGTGAACTTACCTATTTTGATGAGgtat-caatctcacatgaagctgtattgtagtttattgttctttttgtttactcttttactttaattaatgatgcatcttgaagaaactatttatttccaacaattatatctagcaaattcttagaaggttcttcaactgtatgcttattgttgctatgtttcacttgtag
  |||| || |  |||||||| |||   || || ||||| ||||| || ||| | || ||||| || || |||||||||||||| |||||||||||||||||||  | | ||  ||  |   | || ||| | || |      | |||| |   | |||       | ||  ||  ||||    ||    |||||||  || || |  || || || | |  |      |    ||                                   
GCGAGAGGTCAAGAATGTTCGGGGTTCGACCCAAAAGAAAATTGAGAAACTTCGGCAGCTACTATCAGGCCTTCTTAGTGAACTGACCTATTTTGATGAGgtatgtactgtcctatttatgcgaatggta-tgtact----catatgttgaacttgtta-------tgattgtgtgtctttgttaa--cgtttattt--aaaaagttcatttaacatagtggttcgcattgtggcag----------------------------------