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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTTGAGTGTAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGCATCAAGACTCACCTTGCTATCAGTCACTTGGATGTTAACAAGATTAATgtgagtattcttgtctttaaaaattgttcagggactattgatggctatctcatcatctgaaaacaaaagtaatctctcctagtttctttatgcag

Basic information

species Glycine max
transcript GLYMA06G10050.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10050.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0001g07520.t01 (Vitis vinifera), 5'ss of exon 8
CAATTTGAGTGTAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGCATCAAGACTCACCTTGCTATCAGTCACTTGGATGTTAACAAGATTAATgtgagt--------att--cttgtct---------ttaaaaattgt----tcagggact-attgatgg--ctatctcatcatctgaaaacaaaagtaatctctcctagtttctttatgcag
||| || |  || ||||||||||||||||| ||  ||| | ||||||||||||||||||| || ||||| ||||| |||||||||||  | |||||||||||||||        |||   || |||          || |  ||||    | | | |||   |  |||  || || | |||| |||  |     || ||||||     |||||   | |||
CAAATTCACAGTGAATGTTGTGAGGAATCTCAGCCAGAGAACTCATTGGCGCATCAAGACACAACTTGCCATCAGCCACTTGGATGTCGATAAGATTAATgtgagtgagcaaaaattggtttatctacctctcaactagatcttgtctacttaagcacttggttttggtcctttcccttcatttgatgaattgggttatctct-----tttctggttacag

upper sequence: GLYMA06G10050.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 11
CAATTTGAGTGTAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGCATCAAGACTCACCTTGCTATCAGTCACTTGGATGTTAACAAGATTAATgtgagt--------att--cttgtct---------ttaaaaattgttcag--ggactattgatggctatctcatcatctgaaaacaaaagtaatctctcctagtttctttatgcag
||| || |  || ||||||||||||||||||||  ||||  | |||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||        |||   || |||          || |  ||| | |   |  |  ||  |     ||   |||  | |    |  | |    ||  ||  |||||     |||
CAAATTCACAGTGAATGTTGTGAGGAATCTTAGCCAGAAGACCCATTGGCGCATCAAGACTCACCTTGCCATCAGCCACTTGGATGTCAATAAGATTAATgtgagtgagcaaaaattgctttatctacctgtcaactagatcttgcttacttgagcacttctttttggtcctttcacttcatttgatgaattgggtcctctcttttctgctcacag