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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACACTTCTTGCTCAGAGTGCAGTCCATGGTGCAATGGCAGGGTATACTGGATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttctacatatcattacccaaattctgaactgtttaataaatataatgtgttgctctttttttatttgggtacaataattttctattcttgtttt...

Basic information

species Glycine max
transcript GLYMA06G09320.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330797|gb|GR842062.1|GR842062
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|57576052|gb|CX549023.1|CX549023
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|207775996|gb|GD748225.1|GD748225
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|15814347|gb|BI786622.1|BI786622
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|193599972|gb|FK549737.1|FK549737
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|254334741|gb|GR844526.1|GR844526
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|193666112|gb|FK610533.1|FK610533
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|298176657|gb|HO026778.1|HO026778
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|254334742|gb|GR844527.1|GR844527
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|208136778|gb|GD935062.1|GD935062
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGCTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|254320047|gb|GR830963.1|GR830963
EST:     GATTTACAGTTGGACT-GTCAAT-GCAGACAGAC-TATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|254320046|gb|GR830962.1|GR830962
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|254339207|gb|GR847924.1|GR847924
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|58024605|gb|CX711346.1|CX711346
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
EST: gi|17024115|gb|BM095149.1|BM095149
EST:     GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATT                         AGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA
genomic: GATTTACAGTTGGACTGGTCAATGGCAGACAGACTTATATTCCATTCATTgttagtttct ... tgatacccagAGAATCAATGAGAGGCAGAACAAGGTTGTGATTACTGACAGAATGTGGGCA