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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGGGATATTTCGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCCCAAGCCGGCGTTACAAgtaagtatagccttatgtaaattagtttcaatgcatcatggttttgaagttgagacattgatcacggccttcaaatttacattttcactaggcattttagtatactgtaagaagctaattacgtattttttgtcatggttcttgtctgtttgggcag

Basic information

species Glycine max
transcript GLYMA06G07480.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G07480.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G074079_T01 (Zea mays), 5'ss of exon 5
TTTGGGGATATTTCGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCCCAAGCCGGCGTTACAAgtaag--tatagccttatgtaaattagtttcaa-tgcatcatggttttgaagttgagacattgat-cacggccttcaaatttacattttcactaggcattttagtatactgtaagaagctaattacgtattttttgtcatggttcttgtctgtttgggcag
|   ||| || || || |||||||| ||||| ||||| |||||||||||||||||||| ||||||   ||||| ||| | ||   ||| || || |||||||||       | | | |   ||||   ||||| || |  || |   |  ||    | ||   || ||  ||||     | | | ||   ||||  |||   | ||| | ||  |  ||                                          
TCCAGGGTTACTTTGCCTACATGGCCATTGACAGTCTACCAGGGAATCAGTTCTGGGAGAGGATACAACTTCTGTTCATTACAGAAAGACGACGCTACAAgtaacatctctgtcctgtagcaattcacttcaactgaacgattgggct--agcacgggcacaaatgcagagcctgtgtttcttctttgcaactaatcatccgattatgccgtg-gttgcag----------------------------------------

upper sequence: GLYMA06G07480.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G051753_T02 (Zea mays), 5'ss of exon 11
TTTGGGGATATTTCGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCCCAAGCCGGCGTTACAAgtaag--tatagccttatgtaaattagtttcaatgcatcatggttttga--agttgagacattgat-cacggccttcaaatttacattttcactaggcattttagtatactgtaagaagctaattacgtattttttgtcatggttcttgtctgtttgggcag
| ||||| || || || |||||||| || || ||||| |||||||||||||||||||| ||||||  |||||| ||| | ||   |||||| || |||||||||       | |       ||||   |||||   || | || || |   ||    | ||   || ||  ||||     | | | ||   ||||  |||   | ||  | ||  |  ||                                          
TCTGGGGTTACTTTGCCTACATGGCCATCGACAGTCTACCAGGGAATCAGTTCTGGGAGAGGATACAGCTTCTGTTCATTACAGAAAGCCGACGCTACAAgtaacatctctgtcccgcagcaattcacttcaaa--atgaaggattgggctagcacgggcacaaatgcagagcctgtgtttcttctttgcgactaatcatccgattacgccgtg-gttgcag----------------------------------------

upper sequence: GLYMA06G07480.1 (Glycine max), 5'ss of exon 11
lower sequence: AT4G32510.1 (Arabidopsis thaliana), 5'ss of exon 10
TTTGGGGATATTTCGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCCCAAGCCGGCGTTACAAgtaagtatagccttatgtaaattagtttcaatgcatcatggttttgaagttgagacattgatcacggccttcaaatttacattttcactaggcattttagtatactgtaagaagctaattacgtattttttgtcatggttcttgtctgtttgggcag
| ||||| || ||| ||||||||||  ||||||||||||| |||||||| |||||||||||  |   | | || ||| |||| ||  | || || | ||||||            || || |   ||   || ||||      |     || | |  || || |   | |||  || |    |||  ||  |   ||| || |  ||| |  ||                                           
TATGGGGTTACTTCACTTACATGGCTGTTGATAGTCTCCCTGGGAATCAATTCTGGGAAAGACTTCAGTTACTATTCATCACTCCTGGACGTCGATTCAAgtac-----------tgaaactctcttcttatacatcccaacctct--tttaacatgtttataa--actttctgatatg---ttttgctttg---ttttgtgtg-tgtgaacag-------------------------------------------

upper sequence: GLYMA06G07480.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv04s0008g04980.t01 (Vitis vinifera), 5'ss of exon 10
TTTGGGGATATTTCGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCCCAAGCCGGCGTTACAAgtaagtatagccttatgtaaattagtttcaatgcatcatggttttgaagttgagacattgatcacggccttcaaatttacattttcactaggcattttagtatactgtaagaagctaattacgtattttttgtcatggttcttgtctgtttgggcag
|||||||||| || || ||||||||  ||||||| ||||| ||||||||||||||||||||||| ||||| |||||  |||||||  |||| |||||||||||||       | | | ||     |  | ||  | | |  ||| |  || | | || |||| |   |    ||    | |   | | |||     | | | || |       | ||  |||  ||    |||||||     | | ||||   |   
TTTGGGGATACTTTGCCTACATGGCCGTTGATAGCCTCCCTGGGAATCAGTTCTGGGAAAGGATCTTGCTGCTCTTTATCACCCCTGGCCGCCGTTACAAgtaag-------tcacgcaataggatcgcgatttagc-taatttcgccgt-ggggcagtgataaatacag--aaccagaaaaaatgaatagatgactaattttatttattattgtta--tactgatcccatgtcatg--caatatttgttacag---