Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTGCAAGGCAATAAACTCTCAGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTTgtaagcattgtactaaagcaaacttatgaagtttctttgttgacttgtattctttctcttatttactaatcggtctttcgacatttcctatag

Basic information

species Glycine max
transcript GLYMA06G05900.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05900.3 (Glycine max), 5'ss of exon 11
lower sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 11
GTCATTGCAAGGCAATAAACTCTCAGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTTgtaagcattgtactaaagcaaacttatgaagtttctttgttgacttgtattctttctcttatttactaatcggtctttcgacatttcctatag
 ||||||||||||||| ||||||| ||| | |||||||||||||||||||| |||||||| ||| | |||||||||| | | | ||    | ||   |||||| |         |||| ||   |||   | ||  ||| |  |||  |  |   | |  || ||
ATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTTgtaagtacttttctt---ctaatcaatgaagct---------acttataacattt---tcatgaactta--ggttatatgttttcttttacag

upper sequence: GLYMA06G05900.3 (Glycine max), 5'ss of exon 11
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 11
GTCATTGCAAGGCAATAAACTCTCAGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTTgtaagcattgtactaaagcaaacttatgaagtttctttgt-tgacttgtattctttctct-tatttactaatcggtcttt-cgacatttcctatag--------------
 || |||||||| ||  | || |||||||| || ||||||||||||||||| ||||| || ||| ||||||||||||  || | | |||||    | |||   ||  | |   |||  |  ||||||||| | ||| ||   ||   | | |    |||||  | |                
ATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTTgtaag--ttatccaaaagc---ttaatgtgcttattctaagtgatgtccattctttctttctatatatacatgtatttctgtttcatttatttttacttgttttacccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208314541|gb|GE113877.1|GE113877
EST:     CATATTCCATTAGTGATTGGTCTGATGCAAGCGCTTACTGTCTT                         AGATTTGAGTTGTAATATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAA
genomic: CATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTTgtaagcattg ... tttcctatagAGATTTGAGTTGTAACATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAA
EST: gi|208062441|gb|GD860519.1|GD860519
EST:     TCAGTGATTGGTCTTGATGCAAGCGCTTACTGTCTT                         AGATTTGAGTTGTAACATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAA
genomic: TCAGTGATTGGTC-TGATGCAAGCGCTTACTGTCTTgtaagcattg ... tttcctatagAGATTTGAGTTGTAACATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAA
EST: gi|193652004|gb|FK597274.1|FK597274
EST:     ATGCAAGCGCTTACTGTCTT                         AGATTTGAGTTGTAACATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAA
genomic: ATGCAAGCGCTTACTGTCTTgtaagcattg ... tttcctatagAGATTTGAGTTGTAACATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAA