Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGATGTTCTTGGTCAGTTCATGCCTTTGGTTGGTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCAATCAAGgtttgcttatcttgtccttgagtttagatgttttgagactgctacaatatgataatgtggttaaatcctctgcatacactgatcatacaccattgtttta...

Basic information

species Glycine max
transcript GLYMA06G04230.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G04230.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os11g40080.1 (Oryza sativa), 5'ss of exon 4
GTCAGATGTTCTTGGTCAGTTCATGCCTTTGGTTGGTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCAATCAAGgtttgcttat--cttgtccttgagtttagatg----ttttgagactgctacaatatgata--atgtggttaaatcctctgcat-acactgatcatacaccattgtttta---------------------------------------------------------------------------------
||| ||||||||||| |||||||||||  |||||||| |||| ||||| || |  ||||||||||||||||| || ||||| ||||| ||| |    ||  | |   | ||||  |     ||       |   ||||     ||  |  ||  | | |  |  |  | | ||||    |      |||| |                                                                                   
GTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGTGTTGATTGGTCTCAAAATGGTGTTGCACATTTATTTTCTGCAATAAAGgtatgcatgctactcatgcaccattttaagttccacttccttatgtagcacaaaccagtaggaattgactgattattgcgttttatactgtgtgtgtgtgtttgtctctatctatgtgaattcatgcaccaatctggtcctaaaatgtttattgacttgagcttgttcttgttgccttccatttctgcag

upper sequence: GLYMA06G04230.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G42870.2 (Arabidopsis thaliana), 5'ss of exon 5
GTCAGATGTTCTTGGTCAGTTCATGCCTTTGGTTGGTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCAATCAAGgtttgcttatcttgtccttgagtttagatgttttgagactgctacaatatgataatgtggttaaatc--ctctgcatacactgatcatacaccat-tgtttta-----------
 || |||||  | || ||||| ||||||||||||||||| || |||||||| ||||||||| ||||||| || || ||  | ||||| || ||||||   | ||   | |   |  || |  |    ||  | |||||| |    | ||| |  ||   || | |   |  || ||   | |   |||           
ATCGGATGTATTAGGCCAGTTTATGCCTTTGGTTGGTATAGATTGGTCACAAACAGGTGTTACACATTTGTTTTCGGCTGTAAAGgtctg-ttatctgtgctttacttgttcgtaattcgt-atcattatga-atgatactagcatcaaaacaacttgacaaaaagcaaagattcattttctcccttacatttgtacag

upper sequence: GLYMA06G04230.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0001g10680.t01 (Vitis vinifera), 5'ss of exon 7
GTCAGATGTTCTTGGTCAGTTCATGCCTTTGGTTGGTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCAATCAAGgtttgcttatcttgtccttgagtttagatgttttg--agactgctacaatatgataatgtggttaaatcctctgcatacactgatcatacaccattgtttta-
|||||||||||| || |||||||||||| |||||||  | || ||||||||||||||||| |||||| |||| || || || |||||||| |    ||   | |  |||   ||  || |  | | |   | |  ||| | ||    ||||          || | ||  || |   | || |||   
GTCAGATGTTCTAGGGCAGTTCATGCCTATGGTTGGAGTAGATTGGTCACAGACAGGTGTAGCACATCTATTTTCTGCTATTAAGgtttgttgtgtttcctcatatgttcttataattaggaaaattttcaaatcatgtttat-cacttaaggaagtattttatattg--caaatttccttctttagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426468|gb|CA937988.1|CA937988
EST:     GTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCAATCAAG                         GAAAATGGTTACCAACTGCTTTTTCTCAGTGCTCGTTCAATTTCTCAGGCC
genomic: GTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCAATCAAGgtttgcttat ... acgtttacagGAAAATGGTTACCAACTGCTTTTTCTCAGTGCTCGTTCAATTTCTCAGGCC