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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGACCAGTGATTTTCTGAGAAATGATTATTTATCGTTGGATATGCCAATAGACAGTGATACGTTCCGTGTGCCTCCTGGTTACAACGCTCCCCAACAGgtaataactaataagcgtgtcttttttcatgggagattgaaaatataagtatcctatctttgttatgctgatttttgttgaggatgtggatttggaaag

Basic information

species Glycine max
transcript GLYMA06G03100.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g13330.t01 (Vitis vinifera), 5'ss of exon 1
AAAGACCAGTGATTTTCTGAGAAATGATTATTTATCGTTGGATATGCCAATAGACAGTGATACGTTCCGTGTGCCTCCTGGTTACAACGCTCCCCAACAGgtaataactaataagcgtgtcttttttcatgggagattgaaaatataagtatcctatctttgttatgctgatttttgttgaggatgtggatttggaaag----------
    || |||  ||||   ||||   || |  ||||    ||||||||| |||||||||||  |||||| |||||||||||||| || || || ||||||||      | |    | ||  ||| ||         |  |||  ||  ||  | |||| || | ||  ||| | |  |  ||     | | |   |||           
GGTAACAAGTAGTTTTGCTAGAACCAATAACATATCTGCTGATATGCCATTAGACAGTGATGTGTTCCGAGTGCCTCCTGGTTATAATGCCCCACAACAGgtttggtttcagtgccatgaatttgtt---------tcaaaatgatctgttccttatcgttttgattttgagtatgttcaagttcacgaactgccaaaaaaaaacctta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173183|gb|HO020167.1|HO020167
EST:     TAGACAGTGATACGTTCCGTGTGCCTCCTGGTTACAACGCTCCCCAACAG                         GTGCATATAACACAAGGAGATCACGTAGGGAAAGGTGTTATCATCTCTTGG
genomic: TAGACAGTGATACGTTCCGTGTGCCTCCTGGTTACAACGCTCCCCAACAGgtaataacta ... atttggaaagGTGCATATAACACAAGGAGATCACGTAGGGAAAGGTGTTATCATCTCTTGG