Sequence
atgc intronic sequence ATGC exonic sequenceGTGGACGAACCAGATGCAGGAAACGTTGAACTCAAAGAAGAAAGGGGATGCTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgttagtaattcctggctcttggttatattgaagagtgtgactcagttggacttttggttctcctattttcacaatttcatgaattttgttcctctctcct...
Basic information
species | Glycine max |
transcript | GLYMA05G37870.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 10
GTGGACGAACCAGATGCAGGAAACGTTGAACTCAAAGAAGAAAGGGGATGCTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgttagtaattcctggctcttggttatattg-aagagtgtgactcagttg--gacttttggttctcctattttcacaatttcatgaattttgttcctctctcct
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GTGGACGAATCAGATGCAAGATACGTTGAACTCAAAAAAGAAGGGTGACAATGCTTTTCGACAGAAGGATTTTACTGCTGCCATTGATTGCTATTCCCAGgtttgatgtgttctgctctt--ctattttatatggatgtgaccgagatactggagttgcatgattgaatgtgattagagtcataggttcgatgtcttccaat-
upper sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 11
GTGGACGAACCAGATGCAGGAAACGTTGAACTCAAAGAAGAAAGGGGATGCTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgttagtaattcctggctcttggttatattgaagagtgtgact--cagttggacttttggttctcctattttcacaatttcat---gaattttgttcctctctcct
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GTGGACCAACCAGATGCAAGAAACATTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCCGGCACAAAGATTTTAGAGCTGCAATTGAATGCTATACCCAGgtcaa-aatggttaaccaccccttttat-gaattttattattattattattattattattattattattttatcatgtctatttggaagtagaatgcacagt---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192328399|gb|FK020110.1|FK020110EST: CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATG TTCATTGATGTTGGAACCATGGTTTCTCCAACGGTTTATGTACGTCGTAGT
genomic: CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgttagtaatt ... tgtaatgcagTTCATTGATGTTGGAACCATGGTTTCTCCAACGGTTTATGTACGTCGTAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGACGAACCAGATGCAGGAAACGTTGAACTCAAAGAAGAAAGGGGATGCTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgttagtaattcctggctcttggttatattgaagagtgtgactcagttggacttttggttctcctattttcacaatttcatgaattttgttcctctctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc