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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttctattggtttcacaattttaactggtatctgttgctttgcattggatttgcagcactttccttgttgtgttattgtaaaccattattcttttcag

Basic information

species Glycine max
transcript GLYMA05G37850.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37850.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv02s0025g03530.t01 (Vitis vinifera), 5'ss of exon 11
GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttctattggtttcacaattttaactggtatctgttgctttgcattggatttgcagcactttccttgttgtgttattgtaaaccattattcttttcag
|||||  | || |||| ||||||||   | ||||||||||| ||||   ||||||||||||| |||||  ||||||| ||||| ||||||||        || ||   |  |  |  || || |     ||  | |   || |||  |  |     |      | |||||||         | |||  |||||
GACTTCATAGCAGGAAAACTTCCTTCACTTCCTGGTGAATTGCCAAACTTCAATGATTGGGAGAATCATCTGACAACAATATTCCCTGAGgt--------ataggcacctgagatcaaattgatgaaattttatatttcttagat--gttgtcacctaagaaatatgttatt---------ttttccattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12691343|gb|BG157679.1|BG157679
EST:     TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG                         GTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: gi|13480024|gb|BG509367.1|BG509367
EST:     TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG                         GTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: gi|9900602|gb|BE609570.1|BE609570
EST:     TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG                         GTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGGCCTTG
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGA-GGGCCTTG
EST: gi|120494105|gb|EH222272.1|EH222272
EST:     ATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG                         GTCAGNCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
genomic: ATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: gi|19453403|gb|BM954813.1|BM954813
EST:     TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG                         GTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: gi|120493888|gb|EH222055.1|EH222055
EST:     TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG                         GTCAGGCTGAAGAGGTATTTGGAGA
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGA
EST: gi|207704837|gb|GD684644.1|GD684644
EST:     TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG                         GTCAGGCTGAAGAGGTATTTGGAGATGCGAGGTGCTGATGGAGGGCCTTGG
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: gi|192299708|gb|FG990032.1|FG990032
EST:     GGGAAAATCACTTGACAACTATATTTCCTGAG                         GTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
genomic: GGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: gi|192303005|gb|FG997021.1|FG997021
EST:     TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGGG                         GTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG