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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCTCTCCTTACTGCTGAATCACGTGCTATTTCTGGAAGAAAAGGGATCCATTCTGCCAAGGATTCTCCAGCCATGCATATAACTGACTTGACCACAgtgagaaaaatgttaattgtactaaattcaacttttactctgaaacattcttaatcttttccccacttttgattcattttag

Basic information

species Glycine max
transcript GLYMA05G33320.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G07350.1 (Arabidopsis thaliana), 5'ss of exon 11
TGATGCTCTCCTTACTGCTGAATCACGTGCTATTTCTGGAAGAAAAGGGATCCATTCTGCCAAGGATTCTCCAGCCATGCATATAACTGACTTGACCACAgtgagaaaaatgttaattgtactaaattcaacttttactctgaaacattcttaatcttttcccca---cttttgattcattttag-----------------------
||||||||| ||  |||||||| | |||||| |  ||||||  ||||| ||||||||||| || || |||||||||||||| || || ||| | ||    || || | |    ||  | || || ||  | ||     |    || |  |  | | |  ||   |    |||||| | || | |                        
TGATGCTCTTCTGGCTGCTGAAGCTCGTGCTCTGGCTGGAAAGAAAGGAATCCATTCTGCAAAAGAATCTCCAGCCATGCACATCACAGACCTAACTGTGgttagtatatatatatatata-tatatatatctccatgtacataataaacgcattttcctcattaacctttttgactaatctaatgtgtaaccatatatttgtctcag

upper sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 10
TGATGCTCTCCTTACTGCTGAATCACGTGCTATTTCTGGAAGAAAAGGGATCCATTCTGCCAAGGATTCTCCAGCCATGCATATAACTGACTTGACCACAgtgagaaaaatgttaat-tgtactaaattcaacttttactct-gaaacattcttaatcttttcccca---cttttgattcattttag-------
|||||| |||||  | |||||||||||||| ||| |||| |  ||||| ||||||||||| |||||||||||||  |||||||| || ||| |    || || ||||| |      | | || | | || |  |  | || | |  | |   ||||| | ||   ||   ||| | ||   ||  |        
TGATGCCCTCCTGGCAGCTGAATCACGTGCCATTGCTGGGAAGAAAGGAATCCATTCTGCAAAGGATTCTCCAGTGATGCATATTACAGACCTTGTAACGgttagaaatagaaacttgtatatttatttgagttccttctttcgtgaaagggttaatttgtttttcagtgcttctaatgacttgcatatctcag

upper sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 11
TGATGCTCTCCTTACTGCTGAATCACGTGCTATTTCTGGAAGAAAAGGGATCCATTCTGCCAAGGATTCTCCAGCCATGCATATAACTGACTTGACCACAgtgagaa-----aaatgttaat--tgtactaaattcaacttttactctga--aacattcttaatcttttccccacttttg-------attcattttag
||||||||||||| |||||||||| |||||||||||||| |||||||| ||||||||||| |||||| ||||||  ||||||||||| ||||||   |  || ||||     |||| | | |  | | ||  ||||   | ||  | | |    ||    |||  |      | |||||         |  |||| ||
TGATGCTCTCCTTGCTGCTGAATCGCGTGCTATTTCTGGGAGAAAAGGAATCCATTCTGCAAAGGATCCTCCAGTGATGCATATAACAGACTTGCTTATGgttagaattctgaaatataactcttatgctggattcttttcttgatataattgccaactataaattcactgtctcttttatgaaaatgtctatttcag