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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGATACATCGAAGTCTGCATATCAATCTGTAGGTTTTGGAAATTCATTTGCCTTCAAATTTAAAGATCTCAGTGGCCGTGTGCATCGATTCAACTGTGgtgagtggcttgtctttggtaaagcattatgaagatttaggaatcctttttttcttcttgtcttagccacaaacatagtgtgtattgatatctgaccctgggccacgtaattgttatcatcttccggtcttccctaccccctttgattcttataagaacttacaagtattgtgttgctgttttttttag

Basic information

species Glycine max
transcript GLYMA05G32930.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32930.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 11
GCTGATACATCGAAGTCTGCATATCAATCTGTAGGTTTTGGAAATTCATTTGCCTTCAAATTTAAAGATCTCAGTGGCCGTGTGCATCGATTCAACTGTGgtgagtggc-ttgtctttggtaaagcattatgaagatttag-gaatcctttttttcttcttgtcttagccacaaacatagtgtgtattgatatctgaccctgggccacgtaattgttatcatcttccggtcttccctaccccctttgattcttataagaacttacaagtattgtgttgctgttttttttag
|||||  |   || |      |||| |||| | ||| |||| ||||||||||||||||| ||| ||||| | |  || ||||| ||||||||||| ||||||||||    |     |   || |  |   ||   | | |  |  ||||  ||| | | |  |  |     | |||   |  |   |||| || ||                                                                                               
GCTGAACCTGGGAGGAACATGTATCCATCTCTTGGTCTTGGGAATTCATTTGCCTTCAAGTTTGAAGATATTAAGGGTCGTGTACATCGATTCAATTGTGgtgagtactatcaaagtctatacaaaaccctgggaactgaatgtgtcctcatttacatttaattcttctttctaactatgaattggttga-atatgctttc------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312688|gb|FK004376.1|FK004376
EST:     TGCCTTCAAATTTAAAGATCTCAGTGGCCGTGTGCATCGATTCAACTGTG                         GTACTGAACATATAGATGAGCTAGTTTCTACAATCATGCAGAGACTTGATG
genomic: TGCCTTCAAATTTAAAGATCTCAGTGGCCGTGTGCATCGATTCAACTGTGgtgagtggct ... ttttttttagGTACTGAACATATAGATGAGCTAGTTTCTACAATCATGCAGAGACTTGATG
EST: gi|192306261|gb|FG996861.1|FG996861
EST:     TGCCTTCAAATTTAAAGATCTCAGTGGCCGTGTGCATCGATTCAACTGTG                         GTACTGAACATATAGATGAGCTAGTTTCTACAATCATGCAGAGACTTGATG
genomic: TGCCTTCAAATTTAAAGATCTCAGTGGCCGTGTGCATCGATTCAACTGTGgtgagtggct ... ttttttttagGTACTGAACATATAGATGAGCTAGTTTCTACAATCATGCAGAGACTTGATG
EST: gi|192312689|gb|FK004377.1|FK004377
EST:     TGCCTTCAAATTTAAAGATCTCAGTGGCCGTGTGCATCGATTCAACTGTG                         GTACTGAACATATAGATGAGCTAGTTTCTACAATCATGCAGAGACTTGATG
genomic: TGCCTTCAAATTTAAAGATCTCAGTGGCCGTGTGCATCGATTCAACTGTGgtgagtggct ... ttttttttagGTACTGAACATATAGATGAGCTAGTTTCTACAATCATGCAGAGACTTGATG