1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAGAATGCCAACACTAAGAAGGAGAAAAAGAGGAAGGTGAAGCACAGTGAAGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAGgttaggattttgtatgatgtggctatccttacaaatcaaaatacatactgtgagaaatttccttgataataatactaaatcttttccag
species | Glycine max |
transcript | GLYMA05G32100.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAG GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGCTGGAGAAGAEST: gi|208224320|gb|GE028029.1|GE028029
genomic: AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAGgttaggattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
EST: AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAG GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGAEST: gi|193451358|gb|FK421348.1|FK421348
genomic: AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAGgttaggattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
EST: AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAG GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGAEST: gi|208206769|gb|GE002518.1|GE002518
genomic: AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAGgttaggattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
EST: GCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGTAATGAAG GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGCTGGAGAAGEST: gi|208193488|gb|GD992905.1|GD992905
genomic: GCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGG-AATGAAGgttaggattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAG
EST: AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAG GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGCTGGAGAAGA
genomic: AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAGgttaggattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAATGCCAACACTAAGAAGGAGAAAAAGAGGAAGGTGAAGCACAGTGAAGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAGgttaggattttgtatgatgtggctatccttacaaatcaaaatacatactgtgagaaatttccttgataataatactaaatcttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT