1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTGCTTGATCTTGTGGAGAAGAGTTGTCATCAAATACACAAGGAAACCATGGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttttgtcccttttccctctgttgctcctctcacattttgttatctctgttgttttaagagggagttggggacacggggagggaagtctggtttatggaaaatggtagaatcgtgactgttcggtgttcacatctcaagtatttgcgataatgcttgtttctggtaattgcag
species | Glycine max |
transcript | GLYMA05G32030.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATGEST: gi|254341095|gb|GR854823.1|GR854823
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATGEST: gi|151394588|gb|EV264459.1|EV264459
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATGCTGTCACAG GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATGEST: gi|208276227|gb|GE075235.1|GE075235
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATGEST: gi|193395772|gb|FK364831.1|FK364831
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTCCACATACTGTCACAG GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATGEST: gi|21601284|gb|BQ611615.1|BQ611615
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATGEST: gi|151409910|gb|EV279718.1|EV279718
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG GGCATCTCAATATTGATGTGATTTTGTACTGAAGTC-CCTTTTCAGGAATGEST: gi|192309223|gb|FG999450.1|FG999450
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATGEST: gi|22524861|gb|BU083672.1|BU083672
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG GGCATCTCAATATTGATGTEST: gi|8827475|gb|BE211205.1|BE211205
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGT
EST: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTTGATCTTGTGGAGAAGAGTTGTCATCAAATACACAAGGAAACCATGGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttttgtcccttttccctctgttgctcctctcacattttgttatctctgttgttttaagagggagttggggacacggggagggaagtctggtttatggaaaatggtagaatcgtgactgttcggtgttcacatctcaagtatttgcgataatgcttgtttctggtaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG