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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCACTAACTGGAGCTATAACTACCCCCCTTGATGTCATCAAGACAAGGTTAATGGTTCAAgtaagcagtaatcctgtttcccttttttaatcttgtttttacaacttagacatctacatacaaccacgcacatacgataccttatgtatatagataccttatgtatatggataatctagaagcaaatcaataagaatattcagtgtgaattatcaagccattcataaggtcctattttcctcttcaag

Basic information

species Glycine max
transcript GLYMA05G31870.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31870.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G042027_T02 (Zea mays), 5'ss of exon 11
GTGCACTAACTGGAGCTATAACTACCCCCCTTGATGTCATCAAGACAAGGTTAATGGTTCAAgtaagcagtaatcctgtttcccttttt-taatcttgtttttacaacttagac-atctacatacaaccacgcacatacgataccttatgtatatagataccttatgtatatggataatctagaagcaaatcaataagaatattcagtgtgaattatcaagccattcataaggtcctattttcctcttcaag
| ||  | |||||||||||||| || |||||||||||||| |||||||| || |||||||| ||    | |  | |     |  |      ||   |  || | ||     ||| || | ||||    | || |   | |  ||   |                                                                                                        
GCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGATTGATGGTTCAGgtgtagacttgtacgaagactttccgcgcaaatgtccttctgcattactgactatttccatattggc-cgtaacaatgtaactgcag-------------------------------------------------------------------------------------------------------