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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGgtctgttacttggcattgtacttgaagttccttgttcatctggtgttcatatgagatgtctttttcctccgtattgtag

Basic information

species Glycine max
transcript GLYMA05G30430.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30430.2 (Glycine max), 5'ss of exon 11
lower sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGgtctgttacttggcattgtacttgaagttccttgttcatctggtgttcatatgagatgtctttttcctccgtattgtag------------------------
||||||||| || ||||| || ||||||||||| ||| |||| || ||||||| |||||| || ||| |||| |||||||| ||||| |||||| | |||||   ||  | ||| |||     |  ||     ||     || |  |||| ||   | |||    | || |   ||||                         
GTTGAAAGAATTTCGTGGTCACACATCTTATGTAAATCATGCCATCTTTACAAGTGATGGAAGCCGTATTATCACTGCCTCCAGTGATTGTACAGTAAAGgtaaattcttcggctttg-----gctgtcagcagtatcattgtttctcatttggactctctgccccttctgccgtgtaataacagtcttgtttccttgcacag

upper sequence: GLYMA05G30430.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv17s0000g08930.t01 (Vitis vinifera), 5'ss of exon 11
GTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGgtctgtta--cttggcattgtacttgaag------------------ttccttgttcatctggtgttcatatgagatgtctttttcctccgtattgtag
||| || || |||||||||||| ||||||||||||||||||| || ||||||||||| ||  |||||||| |||||||||| ||||| || ||| | |||||   ||   |||| | | | |  |||||                   |  ||  |  ||  |||  ||||  || |  | | | |||   |||| |||
GTTAAAGGAATTCCGTGGCCATTCATCTTATGTGAATGATGCTATATTTACAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGgtaaatttatcttgtcctgggatgtgaagacaacagactaggttaggctatttcattctcctgtgcccataacaggttgcatatgcct---tattatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208065883|gb|GD864380.1|GD864380
EST:     CAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAG                         GTCTGGGATGTAAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCT
genomic: CAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGgtctgttact ... cgtattgtagGTCTGGGATGTAAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCT
EST: gi|193668798|gb|FK609032.1|FK609032
EST:     CAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAG                         GTCTGGGATGTAAAGACTACAGACTGCATACAAAC-TTTAAGCCACCTCCT
genomic: CAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGgtctgttact ... cgtattgtagGTCTGGGATGTAAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCT