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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGATCTGGTGTGGTTATCACTGTTGGGAAGTATGTAACACCAAATCACAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAGgtacaatttgattttttttttcttttctttttttccctcgtagtcaaaatggtaatatggtgcatgatctgagcccccatttttgcag

Basic information

species Glycine max
transcript GLYMA05G29820.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29820.2 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g47450.1 (Oryza sativa), 5'ss of exon 12
GATGGATCTGGTGTGGTTATCACTGTTGGGAAGTATGTAACACCAAATCACAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAGgtacaatttgattttttttttcttttctttttttccctcgtagtcaaaatggtaatatggtgcatgatctgagcccccatttttgcag
|| || |||||  | ||  |||| || || |||||||| |||||||||||||| |||||||| || ||||| ||||| || |||| ||      |||| ||| ||| |  |  ||       |||  ||| || | ||| |    |      ||||   ||  |  |    |   ||  || |  |||
GACGGTTCTGGCATTGTCGTCACAGTGGGCAAGTATGTGACACCAAATCACAAAGACATAAATGGAAATGGCATAGAACCAGACTACCGCCGCATTCCTGgtgcaactc-acattcacccattttcttttgttccactcatgtata------taatgcagttaac-actgaatttcctgttgtgacag

upper sequence: GLYMA05G29820.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv10s0003g02730.t01 (Vitis vinifera), 5'ss of exon 11
GATGGATCTGGTGTGGTTATCACTGTTGGGAAGTATGTAACACCAAATCACAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAGgtacaatttgattttttttttcttttctttttttccctcgtagtcaaaatggtaata--tggtgcatgatctgagcccccatttttgcag
|||||||||||||||||| ||||  ||||||||||||| || |||||||||| ||||||||||   ||||||||||||||||| || |   || |||||||||  |||                  |||  |||   ||||  ||||||||| ||||      ||   || | | |       | |||||
GATGGATCTGGTGTGGTTGTCACAATTGGGAAGTATGTCACCCCAAATCACATGGACATAAACAAAAATGGAATAGAGCCTGATTTTCGAGAATTTCCAGgtaagatt------------------cttgatttggttcgtgatcaaaatggaaataatccaggccccatttaatctttggaatatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337327|gb|CO981193.1|CO981193
EST:     CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAG                         CATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
genomic: CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAGgtacaatttg ... atttttgcagCATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
EST: gi|120530195|gb|EH258329.1|EH258329
EST:     CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAG                         CATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
genomic: CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAGgtacaatttg ... atttttgcagCATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
EST: gi|6848755|gb|AW351045.1|AW351045
EST:     CAAGGACATAAACGGCAATGGAATAGAGNNNGACTTCCAGAAACTTCCAG                         CATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
genomic: CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAGgtacaatttg ... atttttgcagCATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
EST: gi|151398365|gb|EV268236.1|EV268236
EST:     CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAG                         CATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
genomic: CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAGgtacaatttg ... atttttgcagCATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
EST: gi|16343976|gb|BI969571.1|BI969571
EST:     NAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAG                         CATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
genomic: CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAGgtacaatttg ... atttttgcagCATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG