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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCTGTGACTGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCTGGAGTTTTCTTCTTTTATGACATATCTCCAATCAAGgtaaaattgcctaattttactagcaaattgtataaaatgttgatgtttcttcttcttccgttgactgcactcaacatttgtgttttcccactttagtttg...

Basic information

species Glycine max
transcript GLYMA05G24610.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G24610.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G36050.2 (Arabidopsis thaliana), 5'ss of exon 11
TATTCTGTGACTGAGCATTTCAAGAGTTCAGAGCTGGGT--GTTGCAGTT----CCTGGAGTTTTCTTCTTTTATGACATATCTCCAATCAAGgtaaaattgcctaattttactagcaaattgtataaaatgttgatgtttcttcttcttccgttgactgcact-caacatttgtgttttcccactttagtttg
|  || ||||| || ||| | ||||| |||||    |||    |||| |     ||||||||||||||||| |||||  | |||||||||||||| |   |   |   | |  || |      | || |  ||  || | |  || |  |||  | |||  | |    | |||  ||                 
TTCTCAGTGACCGAACATGTAAAGAGCTCAGAAGCAGGTCAACTGCAATCTTTACCTGGAGTTTTCTTCTTCTATGATCTCTCTCCAATCAAGgtgagtgtatttgtgtgttttaactgcagttttagagcgt--atttatagtcataatcc--taactaaaatgtgtcgtttccgtag---------------

upper sequence: GLYMA05G24610.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S54_13V6.1 (Physcomitrella patens), 5'ss of exon 11
TATTCTGTGACTGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGT---TCCTGGAGTTTTCTTCTTTTATGACATATCTCCAATCAAGgtaaaattgcctaattttactagcaaattgtataaaatgttgatgtttcttcttcttccgttgactgcactcaacatttgtgttttcccactttagtttg-
| ||||||||| ||||| |  |       ||| |  ||      |||   |||||| |||||||||||||| ||| |||| || |||||||||    |  | ||   |    |  |       ||  |   | | ||| | |   |  |||  |  |||   | |||     |   |   ||    ||   
TTTTCTGTGACGGAGCACTATACAGCGGGAGACCACGGACCAAGAGTCGTTCCTGGTGTTTTCTTCTTTTACGACTTATCACCCATCAAGgtacc-ctatccaaccgtttctgtgacggaccaaattttacgttttttgtacacttctcgtgcagagcataaatcatcccaatgggctacctgccattcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12772634|gb|BG237488.1|BG237488
EST:     GTGTTGCAGTTCCTGGAGTTTTCTTCTTTTATGACATATCTCCAATCAAG                         GTCAACTTTAAAGAGGAACATACTCCATTTTTACATTTCCTGACCAATATT
genomic: GTGTTGCAGTTCCTGGAGTTTTCTTCTTTTATGACATATCTCCAATCAAGgtaaaattgc ... tatgctgcagGTCAACTTTAAAGAGGAACATATTCCATTTTTACATTTCCTGACCAATATT
EST: gi|22929560|gb|BU546699.1|BU546699
EST:     GTGTTGCAGTTCCTGGAGTTTTCTTCTTTTATGACATATCTCCAATCAAG                         GTCAACTTTAAAGAGGAACATATTCCATTTTTACATTTCCTGACCAATATT
genomic: GTGTTGCAGTTCCTGGAGTTTTCTTCTTTTATGACATATCTCCAATCAAGgtaaaattgc ... tatgctgcagGTCAACTTTAAAGAGGAACATATTCCATTTTTACATTTCCTGACCAATATT
EST: gi|7233507|gb|AW568852.1|AW568852
EST:     GTGTTGCAGTTCCTGGAGTTTTCTTCTTTTATGACATATCTCCAATCAAG                         GTCAACTTTAAAGAGGAACATATTCCATTTTTACATTTCCTGACCAATATT
genomic: GTGTTGCAGTTCCTGGAGTTTTCTTCTTTTATGACATATCTCCAATCAAGgtaaaattgc ... tatgctgcagGTCAACTTTAAAGAGGAACATATTCCATTTTTACATTTCCTGACCAATATT