1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTGAAGCCTAATGCAGTGTTGGGAGCATTTGAAGCTAGGGCTGCTAAGAAGGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAGgtaaatgatttaacacgcttaaactcacaagctatatgctcatgttgatttgttttcttggtgtggtgggggagacagatgaacacttgaacaaccacag...
species | Glycine max |
transcript | GLYMA05G04940.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAG GTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCCEST: gi|192321454|gb|FK011740.1|FK011740
genomic: GGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAGgtaaatgatt ... tggatgacagGTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCC
EST: GGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAG GTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCCEST: gi|192328167|gb|FK022861.1|FK022861
genomic: GGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAGgtaaatgatt ... tggatgacagGTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCC
EST: GGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAG GTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCC
genomic: GGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAGgtaaatgatt ... tggatgacagGTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAAGCCTAATGCAGTGTTGGGAGCATTTGAAGCTAGGGCTGCTAAGAAGGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAGgtaaatgatttaacacgcttaaactcacaagctatatgctcatgttgatttgttttcttggtgtggtgggggagacagatgaacacttgaacaaccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggag