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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATTACATAGCGTGGGTCTGTGATCAGGATGCATATGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtctgtcacattggttattttcagaacttgttcatgtttaaatgtcctcaagaactagggtgaagatgaagatgtgcaattgttatttattttgtaagatgcactttacgcattgcatctttactaacttcaggatttgaatttcccttgtttag

Basic information

species Glycine max
transcript GLYMA05G01300.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G01300.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os05g45960.1 (Oryza sativa), 5'ss of exon 10
GAAGATTACATAGCGTGGGTCTGTGATCAGGATGCATATGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtctgtcacattggttattttcagaacttgttcatgtttaaatgtcctcaagaactagggtgaagatgaagatgtgcaattgttatttattttgtaagatgcactttacgcattgcatctttactaacttcaggatttgaatttcccttgtttag
|  |||||||| || ||||| || || |||||||| ||||| |||||||||||||| ||||| || || ||  |  |||| |||||  ||||   |      | ||| | | |       |   || || | | |        |||   ||||  ||||   |   ||  | | | |||| ||  | | | |  |||   |                                            
GTTGATTACATTGCATGGGTTTGCGACCAGGATGCTTATGCTTGCAGTGGTCAGAAGTGCTCTGCTCAGTCTATTCTATTCATGCACAAGgta-atagtgaagattagtattatgttccttctttgcttgagtcttt-----gact---gtgatcatgactcttgaca--tataacttatgttacatgcttcttttttatc--------------------------------------------

upper sequence: GLYMA05G01300.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv17s0000g05800.t01 (Vitis vinifera), 5'ss of exon 11
GAAGATTACATAGCGTGGGTCTGTGATCAGGATGCATATGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtctgtcacattggttattttcagaacttgttcatgtttaaatgtcctcaagaactagggtgaagatgaagatgtgcaattgttatttattttgtaagatgcactttacgcattgcatctttactaacttcaggatttgaatttcccttgtttag
|  || ||  | || |||||||||||||| |||||||||||||||||||| || || ||||| || || ||| |  |||| |||||||||||  |   | |     | | | | ||||   |    |||  || |  | |      ||  |   | || ||   || | |  || ||   || | |     | ||                                                  
GTGGACTATGTTGCATGGGTCTGTGATCAAGATGCATATGCATGCAGTGGACAAAAGTGCTCTGCGCAGTCAATAGTATTCATGCATGAGgttagctgcttc----actctgacaactctgtaggttttgcatttgtttatttggaagattatggttgtaggc-tgaagtaattgttctcttggcatttctctct--------------------------------------------------

upper sequence: GLYMA05G01300.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S41_177V6.1 (Physcomitrella patens), 5'ss of exon 12
GAAGATTACATAGCGTGGGTCTGTGATCAGGATGCATATGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtctgtcacattggttattttcagaacttgttcatgtttaaatgtcctcaa--gaactagggtgaagatgaagatgtgcaattgttatttattttgtaagatgcactttac--gcattgcatc--tttactaacttcaggatttgaattt--cccttgtttag-------------------------
|| || ||  | |||||||| ||||| ||||| || || || |||||||| || |||||||||||||||||| |  ||||||||||||||||    || ||   ||  ||| ||| | ||||   |    |||    | ||  | ||  || |  || |      ||   |||| | |  ||  | | |  |  |||| |   |||||   |   || || |||||     |||  | |    || | | |                           
GAGGACTATGTTGCGTGGGTGTGTGACCAGGACGCTTACGCTTGCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAGgttc--catatacatttcttttagagcatgttttcgaggcaattcttttaaatgtacatggatctagctctgagagtattattgctgtacatcat-tgaagtcgacttaaaaagcattttgttagttgaccaacttggtcttttacaataagtccatatctgtgatgtccatattttcttcgttgcag

upper sequence: GLYMA05G01300.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ29772 (Selaginella moellendorffii), 5'ss of exon 10
GAAGATTACATAGCGTGGGTCTGTGATCAGGATGCATATGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtctgtcacattggttattttcagaacttgttcatgtttaaatgtcctcaagaactagggtgaagatgaagatgtgcaattgttatttattttgtaagatgcactttacgcattgcatctttactaacttcaggatttgaatttcccttgtttag
   || ||| | || ||||| || || |||||||||||||| |||||||||||||| || || ||||| ||  |  | || ||||| ||||||  |    ||     || | | | || |     | | ||| | | |  ||    ||                                                                                                 
ATTGACTACGTTGCATGGGTTTGCGACCAGGATGCATATGCGTGCAGTGGTCAGAAGTGTTCGGCACAGTCCATTCTTTTCATGCACGAGgtcgatactgtt-----ttcttaaagctagcaggagctgaaaagccgt--agttgcag-------------------------------------------------------------------------------------------------

upper sequence: GLYMA05G01300.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ08918 (Selaginella moellendorffii), 5'ss of exon 10
GAAGATTACATAGCGTGGGTCTGTGATCAGGATGCATATGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtctgtcacattggttattttcagaacttgttcatgtttaaatgtcctcaagaactagggtgaagatgaagatgtgcaattgttatttattttgtaagatgcactttacgcattgcatctttactaacttcaggatttgaatttcccttgtttag
   || ||| | || ||||| || || |||||||||||||| |||||||||||||| || || ||||| ||  |  | || ||||| ||||||  |    ||     || | | |  | |     | ||||| | | |  ||    ||                                                                                                 
ATTGACTACGTTGCATGGGTTTGCGACCAGGATGCATATGCGTGCAGTGGTCAGAAGTGTTCGGCACAGTCCATTCTTTTCATGCACGAGgtcgatactgtt-----ttcttaaagttagcaggagcttaaaagccgt--agttgcag-------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16995634|gb|BM085006.1|BM085006
EST:     CATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAG                         AACTGGCCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
genomic: CATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtctgtcaca ... ccttgtttagAACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
EST: gi|9898827|gb|BE607795.1|BE607795
EST:     ATTTATGCATGAG                         AACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
genomic: ATTTATGCATGAGgtctgtcaca ... ccttgtttagAACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
EST: gi|8826963|gb|BE210693.1|BE210693
EST:     CATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAG                         AACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
genomic: CATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtctgtcaca ... ccttgtttagAACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
EST: gi|193551899|gb|FK507298.1|FK507298
EST:     CACAATCATTGTTATTTATGCATGAG                         AACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
genomic: CACAATCATTGTTATTTATGCATGAGgtctgtcaca ... ccttgtttagAACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
EST: gi|8827894|gb|BE211624.1|BE211624
EST:     CATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAG                         AACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
genomic: CATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtctgtcaca ... ccttgtttagAACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
EST: gi|5770753|gb|AI973927.1|AI973927
EST:     CATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAG                         AACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
genomic: CATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtctgtcaca ... ccttgtttagAACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA