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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGATGGAAGCGCTGAGACTTTTATCTCTGTCTTCAATCAGGAAGCTGAGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcagttacccttagctaattattggaacacgatgataaattgttattttaatattaaaccaaatatcttgtttatttcag

Basic information

species Glycine max
transcript GLYMA05G00370.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209698297|gb|BW667575.1|BW667575
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|58021049|gb|CX707791.1|CX707791
EST:     GAAGATCGTTGGATGCTATG-TGGATGATCTAGTTAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: GAAGATCGTTGGATGCTCTGCTG-ATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|58017697|gb|CX704439.1|CX704439
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|9204400|gb|BE330624.1|BE330624
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTATATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|207754087|gb|GD724707.1|GD724707
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|193353568|gb|FK319364.1|FK319364
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTAAGGC
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTG-GGC
EST: gi|58018811|gb|CX705553.1|CX705553
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|51341200|gb|CO982517.1|CO982517
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|58014378|gb|CX701120.1|CX701120
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|51344922|gb|CO985655.1|CO985655
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTGATGGAAGCGCTGAGACTTTTATCTCTGTCTTCAATCAGGAAGCTGAGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcagttacccttagctaattattggaacacgatgataaattgttattttaatattaaaccaaatatcttgtttatttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT