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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcgacgcatttcctttgatttcaactgtcctaaaacctacggaacttttttaatgtttcttcaaacattctctgctaagcag

Basic information

species Glycine max
transcript GLYMA04G40750.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7285563|gb|AW598050.1|AW598050
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGT
EST: gi|208190970|gb|GD989630.1|GD989630
EST:     CTCTGAGCTTGTTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: CTCTGAGC-TG-TAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|193307091|gb|FK268831.1|FK268831
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAAGACACCA
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAA-GACACCA
EST: gi|18038768|gb|BM307062.1|BM307062
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|208200891|gb|GD997354.1|GD997354
EST:     CTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: CTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|193726084|gb|FK658964.1|FK658964
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCC-AT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|58018945|gb|CX705687.1|CX705687
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|58019174|gb|CX705916.1|CX705916
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|151412507|gb|EV282319.1|EV282319
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|213593557|gb|DB977389.1|DB977389
EST:     GAGCTGTAGCGGTGTGATCTTGGGTTCACAACCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: GAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcgacgcatttcctttgatttcaactgtcctaaaacctacggaacttttttaatgtttcttcaaacattctctgctaagcag

- - - - - - -  GCAGCT
- - - - - - - - CAGCTC